Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORA70.12-201ENST00000516084 153 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 FAM71BP1-201ENST00000604431 523 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 AC090517.2-201ENST00000614966 680 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 MIR6513-201ENST00000621188 64 ntBASIC0.85□□□□□ -2.27
HDDC3Q8N4P3 AL442644.1-201ENST00000454390 3105 ntBASIC0.84□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.30-201ENST00000362572 97 ntBASIC0.84□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.243-201ENST00000364481 109 ntBASIC0.84□□□□□ -2.27
HDDC3Q8N4P3 FABP5P4-201ENST00000437203 171 ntBASIC0.84□□□□□ -2.27
HDDC3Q8N4P3 RPS20P10-201ENST00000451209 253 ntBASIC0.84□□□□□ -2.27
HDDC3Q8N4P3 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.84□□□□□ -2.27
HDDC3Q8N4P3 PRELID3BP2-201ENST00000605362 201 ntBASIC0.84□□□□□ -2.27
HDDC3Q8N4P3 AC092794.2-201ENST00000620933 563 ntBASIC0.84□□□□□ -2.27
HDDC3Q8N4P3 Y_RNA.330-201ENST00000365230 109 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 RNU6-1215P-201ENST00000384441 102 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 RNA5SP511-201ENST00000410487 115 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 MTND3P8-201ENST00000412909 339 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 AL354751.2-201ENST00000415471 210 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 MTND3P10-201ENST00000450967 341 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 AC114811.1-201ENST00000507207 168 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 MIR1244-1-201ENST00000612829 85 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 MIR1244-3-201ENST00000635744 85 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 MIR1244-2-201ENST00000636449 85 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 MIR1244-4-202ENST00000636813 85 ntBASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.83□□□□□ -2.28
HDDC3Q8N4P3 SNORD114-23-201ENST00000363536 72 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 Y_RNA.482-201ENST00000384377 111 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 MIR2053-201ENST00000459295 91 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 RPL17P19-201ENST00000489069 552 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 RNU6-718P-201ENST00000516166 105 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 MIR2355-201ENST00000517199 87 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 AC136628.3-201ENST00000521868 290 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 AC023442.1-201ENST00000531247 422 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 AC006380.1-201ENST00000603598 186 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 MIR6835-201ENST00000621552 64 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 AL008636.1-201ENST00000625038 1018 ntBASIC0.82□□□□□ -2.28
HDDC3Q8N4P3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 MIR103A2-201ENST00000362154 78 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 RNU6-1301P-201ENST00000362724 104 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 MIR1277-201ENST00000408536 78 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 AL589823.1-201ENST00000429577 183 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 AL162725.1-201ENST00000435405 301 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 RNU6-408P-201ENST00000515910 100 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 RNA5SP255-201ENST00000516370 107 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 RNU6-1337P-201ENST00000516525 95 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 MIR3192-201ENST00000584920 77 ntBASIC0.81□□□□□ -2.28
HDDC3Q8N4P3 RNA5SP457-201ENST00000363657 124 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 SNORD114-2-201ENST00000363953 78 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 MIR548F1-201ENST00000408667 84 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 AC093019.1-201ENST00000443135 252 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 MIR4653-201ENST00000585107 83 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 AC013244.2-201ENST00000603396 103 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 AC004467.1-201ENST00000615678 330 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 AL591926.4-201ENST00000616895 298 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 AC010487.4-201ENST00000637027 61 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 MIR6866-201ENST00000638146 69 ntBASIC0.8□□□□□ -2.28
HDDC3Q8N4P3 RNA5SP264-201ENST00000363115 107 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 SNORD115-30-201ENST00000364117 82 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 Y_RNA.404-201ENST00000383978 102 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 MIR1298-201ENST00000408783 112 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 AL606490.4-201ENST00000423117 127 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 DEFB108E-201ENST00000524692 240 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 AF235103.2-201ENST00000525753 346 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 MIR924-201ENST00000638017 53 ntBASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.79□□□□□ -2.28
HDDC3Q8N4P3 Y_RNA.318-201ENST00000365131 97 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 MIR508-201ENST00000384857 115 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 MIR605-201ENST00000385078 83 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 MIR516B2-201ENST00000385190 85 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 MIR100-201ENST00000385259 80 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 SNORA75.4-201ENST00000391278 119 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 MIR936-201ENST00000401264 98 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 RNU6-351P-201ENST00000516097 100 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 RNU2-12P-201ENST00000517216 168 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 AC007014.2-201ENST00000615581 479 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 AC002553.4-201ENST00000616896 331 ntBASIC0.78□□□□□ -2.28
HDDC3Q8N4P3 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.78□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.88-201ENST00000363029 99 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 U8.5-201ENST00000364528 136 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 RNU6-99P-201ENST00000364721 107 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 SNORD14.1-201ENST00000365609 90 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 RNU6-926P-201ENST00000384075 107 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 MIR520C-201ENST00000385005 87 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 MIR15B-201ENST00000385045 98 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 MIR136-201ENST00000385207 82 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 AC006461.1-201ENST00000412637 326 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 MLLT10P1-201ENST00000418346 262 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 snoU13.25-201ENST00000458945 104 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 AC023827.1-201ENST00000569247 97 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms