Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 AC117454.1-201ENST00000491120 168 ntBASIC0.71□□□□□ -2.3
CDKL3Q8IVW4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.71□□□□□ -2.3
CDKL3Q8IVW4 PDCD5P2-201ENST00000507570 312 ntBASIC0.71□□□□□ -2.3
CDKL3Q8IVW4 RNU6-408P-201ENST00000515910 100 ntBASIC0.71□□□□□ -2.3
CDKL3Q8IVW4 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.71□□□□□ -2.3
CDKL3Q8IVW4 RNU6-197P-201ENST00000516680 100 ntBASIC0.71□□□□□ -2.3
CDKL3Q8IVW4 AL358944.1-201ENST00000528537 144 ntBASIC0.71□□□□□ -2.3
CDKL3Q8IVW4 AL096861.1-201ENST00000610899 123 ntBASIC0.71□□□□□ -2.3
CDKL3Q8IVW4 SNORD114-26-201ENST00000363543 72 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 RNU6-767P-201ENST00000384132 107 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 MIR608-201ENST00000384820 100 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 SNORA75.2-201ENST00000391138 150 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 SNORA75.3-201ENST00000391231 150 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 MIR2355-201ENST00000517199 87 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 AC023442.1-201ENST00000531247 422 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 AC055872.1-201ENST00000570978 278 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 AL669831.3-213ENST00000636676 183 ntBASIC0.7□□□□□ -2.3
CDKL3Q8IVW4 SNORD114-7-201ENST00000362520 77 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 RNU1-133P-201ENST00000364867 167 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 MIR891A-201ENST00000401237 79 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 RNA5SP511-201ENST00000410487 115 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 AL354751.2-201ENST00000415471 210 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 ELOCP24-201ENST00000456370 334 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 LINC01399-202ENST00000458450 244 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 RNA5SP436-201ENST00000516020 115 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 MIR3192-201ENST00000584920 77 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 AC068790.6-201ENST00000602558 258 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 AC004467.1-201ENST00000615678 330 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 MIR6835-201ENST00000621552 64 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 AL008636.1-201ENST00000625038 1018 ntBASIC0.69□□□□□ -2.3
CDKL3Q8IVW4 SNORD68-201ENST00000363214 84 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU6-833P-201ENST00000363486 107 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU6-961P-201ENST00000363893 105 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 SNORD115-30-201ENST00000364117 82 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.361-201ENST00000365515 120 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU6-926P-201ENST00000384075 107 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU6-163P-201ENST00000384396 106 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 SNORA80D-201ENST00000384488 135 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 MIR605-201ENST00000385078 83 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 SNORA69.1-201ENST00000390904 137 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU4-14P-201ENST00000410858 122 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.621-201ENST00000411065 96 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 PIGPP3-201ENST00000425307 415 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 MTND4P28-201ENST00000426217 387 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 MTND4P17-201ENST00000470444 350 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 CYCTP-201ENST00000504253 315 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU6-120P-201ENST00000516077 103 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU6-966P-201ENST00000516479 104 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU2-12P-201ENST00000517216 168 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 AC120024.3-201ENST00000603167 156 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 AC004832.4-201ENST00000608952 331 ntBASIC0.68□□□□□ -2.3
CDKL3Q8IVW4 RNU6-845P-201ENST00000362578 103 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 MIR625-201ENST00000385047 85 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.592-201ENST00000410274 109 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 RPEP5-201ENST00000441137 268 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 SNORA70.12-201ENST00000516084 153 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 SNORD111.1-201ENST00000516421 86 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 RNU6-1337P-201ENST00000516525 95 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 AC090142.3-201ENST00000519012 385 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 AC087588.2-201ENST00000617667 426 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 AC098679.4-201ENST00000624241 654 ntBASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.160-201ENST00000363677 92 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.172-201ENST00000363765 102 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.577-201ENST00000384794 101 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 RNU6-1156P-201ENST00000410365 100 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 AL162725.1-201ENST00000435405 301 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 FGF7P6-202ENST00000451282 293 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.635-201ENST00000459041 101 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 AC114811.1-201ENST00000507207 168 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.691-201ENST00000516611 103 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 RNU6-264P-201ENST00000517134 104 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 MIR4714-201ENST00000580728 77 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 AL590095.2-201ENST00000604136 117 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 PRELID3BP2-201ENST00000605362 201 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 AL591926.4-201ENST00000616895 298 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 AC027279.3-201ENST00000625055 122 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 CASC19-280ENST00000642102 1351 ntBASIC0.66□□□□□ -2.3
CDKL3Q8IVW4 Y_RNA.279-201ENST00000364763 95 ntBASIC0.65□□□□□ -2.31
CDKL3Q8IVW4 Y_RNA.336-201ENST00000365307 109 ntBASIC0.65□□□□□ -2.31
CDKL3Q8IVW4 RNU6-1105P-201ENST00000384774 107 ntBASIC0.65□□□□□ -2.31
CDKL3Q8IVW4 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
CDKL3Q8IVW4 AL031003.1-201ENST00000404229 172 ntBASIC0.65□□□□□ -2.31
CDKL3Q8IVW4 Y_RNA.646-201ENST00000410980 101 ntBASIC0.65□□□□□ -2.31
CDKL3Q8IVW4 RNU6-370P-201ENST00000411008 104 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms