Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 MIR146A-201ENST00000385201 99 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 MIR100-201ENST00000385259 80 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 MIR942-201ENST00000401111 86 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 AC093019.1-201ENST00000443135 252 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 AC114811.1-201ENST00000507207 168 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 RNU6-1213P-201ENST00000517075 94 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 AC090142.3-201ENST00000519012 385 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 AC011604.1-201ENST00000545978 196 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 CYP3A137P-201ENST00000562436 69 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 MIR151B-201ENST00000584249 96 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 SNORA4-201ENST00000584302 138 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 MIR3192-201ENST00000584920 77 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 AC084782.3-201ENST00000612282 578 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 AL591926.4-201ENST00000616895 298 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 CASC19-280ENST00000642102 1351 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 RNY1P14-201ENST00000384426 108 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.577-201ENST00000384794 101 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 MIR625-201ENST00000385047 85 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 SNORA69.1-201ENST00000390904 137 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.621-201ENST00000411065 96 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 FCF1P9-201ENST00000412546 282 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 RNA5SP220-201ENST00000516298 104 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 RNU6-197P-201ENST00000516680 100 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 AC055872.1-201ENST00000570978 278 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 MIR4762-201ENST00000585261 75 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 AC006380.1-201ENST00000603598 186 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 AC087588.2-201ENST00000617667 426 ntBASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.7□□□□□ -2.3
TRIM40Q6P9F5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 RNU6-767P-201ENST00000384132 107 ntBASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 AL031003.1-201ENST00000404229 172 ntBASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 MIR1298-201ENST00000408783 112 ntBASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.592-201ENST00000410274 109 ntBASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 RNU2-64P-201ENST00000411315 191 ntBASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 RPS3AP1-201ENST00000413190 320 ntBASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 PSMC1P5-201ENST00000512850 177 ntBASIC0.69□□□□□ -2.3
TRIM40Q6P9F5 MIR608-201ENST00000384820 100 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 RNU2-54P-201ENST00000410299 190 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 RNU6-1156P-201ENST00000410365 100 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 RNU4-14P-201ENST00000410858 122 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 MTND1P4-201ENST00000435196 415 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 RPEP5-201ENST00000441137 268 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 FCF1P4-201ENST00000448326 183 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 FGF7P6-202ENST00000451282 293 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 RNA5SP255-201ENST00000516370 107 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.691-201ENST00000516611 103 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 AC240442.1-201ENST00000616055 283 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 MIR6835-201ENST00000621552 64 ntBASIC0.68□□□□□ -2.3
TRIM40Q6P9F5 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 RNA5SP264-201ENST00000363115 107 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.101-201ENST00000363154 102 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.122-201ENST00000363331 96 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.166-201ENST00000363730 102 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 RNU6-926P-201ENST00000384075 107 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 RNU6-42P-201ENST00000384165 107 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 SNORA75.6-201ENST00000391318 127 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 MRPS18CP6-201ENST00000423587 223 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 MTND5P15-201ENST00000434246 349 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 RPS20P10-201ENST00000451209 253 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.635-201ENST00000459041 101 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 MTND4P17-201ENST00000470444 350 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 RNU6-120P-201ENST00000516077 103 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 RNU6-1223P-201ENST00000517124 104 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 RNU6-264P-201ENST00000517134 104 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 AC022616.4-201ENST00000522985 181 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 AC098679.4-201ENST00000624241 654 ntBASIC0.67□□□□□ -2.3
TRIM40Q6P9F5 RNU6-845P-201ENST00000362578 103 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.253-201ENST00000364562 112 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.269-201ENST00000364685 89 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.279-201ENST00000364763 95 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 Y_RNA.355-201ENST00000365462 98 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 RNY3P4-201ENST00000384428 101 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 RNU6-370P-201ENST00000411008 104 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 RNU2-61P-201ENST00000411069 191 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 AC117454.1-201ENST00000491120 168 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 SNORA74.3-201ENST00000517108 154 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 DEFB108E-201ENST00000524692 240 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 MIR4653-201ENST00000585107 83 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 RMST_2.1-201ENST00000617263 136 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 MIR6734-201ENST00000621166 68 ntBASIC0.66□□□□□ -2.3
TRIM40Q6P9F5 MIR103A2-201ENST00000362154 78 ntBASIC0.65□□□□□ -2.31
TRIM40Q6P9F5 RNU6-1188P-201ENST00000363795 107 ntBASIC0.65□□□□□ -2.31
TRIM40Q6P9F5 AC117470.1-201ENST00000381974 330 ntBASIC0.65□□□□□ -2.31
TRIM40Q6P9F5 Y_RNA.508-201ENST00000384502 114 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms