Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 MTND1P26-201ENST00000440488 538 ntBASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 Z98949.2-201ENST00000440996 144 ntBASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 USP9YP25-201ENST00000457708 443 ntBASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 MIR5706-201ENST00000579841 80 ntBASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 FGF7P1-201ENST00000582820 288 ntBASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 AC138207.3-201ENST00000585289 166 ntBASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 AC006380.1-201ENST00000603598 186 ntBASIC-0.42□□□□□ -2.48
CHD9Q3L8U1 RNA5SP117-201ENST00000365294 118 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 RNU6-541P-201ENST00000384709 110 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 SNORD28B-201ENST00000390993 75 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AC018865.2-201ENST00000423631 129 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 RPL17P19-201ENST00000489069 552 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 HSPE1P23-201ENST00000509838 286 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 RNU6-1003P-201ENST00000517099 105 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 MTND2P38-201ENST00000522536 667 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 MIR3925-201ENST00000584674 77 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 BNIP3P40-201ENST00000596017 556 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 RMST_3.1-201ENST00000611651 109 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AC006927.2-201ENST00000639256 389 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AC092447.3-201ENST00000426027 686 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 RNU7-172P-201ENST00000517125 64 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 RNU6-323P-201ENST00000521915 107 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AC016597.2-201ENST00000613256 341 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AC006435.5-201ENST00000624486 112 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 RNU6-116P-201ENST00000384042 109 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 MIR522-201ENST00000385071 87 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 SNORD93-201ENST00000408813 74 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 RPS27AP14-201ENST00000422868 454 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.43□□□□□ -2.48
CHD9Q3L8U1 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 SNORA36A-201ENST00000384221 132 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 MTATP6P14-201ENST00000455189 673 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 AC018710.1-201ENST00000506509 158 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 SNORA27.4-201ENST00000516650 95 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 RNU6-1178P-201ENST00000516674 107 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 AL359999.1-201ENST00000604513 294 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 U6.114-201ENST00000636407 96 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 RNU5F-3P-201ENST00000363767 117 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 RNU6-580P-201ENST00000365159 107 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 RNU6-224P-201ENST00000384055 107 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 RNU6-434P-201ENST00000384376 107 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 RNU6-1191P-201ENST00000516799 107 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 MIR3152-201ENST00000579801 74 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 AC022306.3-201ENST00000619930 550 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 AC091948.2-201ENST00000636510 279 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 AL445984.1-201ENST00000637834 659 ntBASIC-0.44□□□□□ -2.48
CHD9Q3L8U1 ZNF299P-201ENST00000406845 1804 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.123-201ENST00000363338 102 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 RNU6-727P-201ENST00000363592 107 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.231-201ENST00000364358 102 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 RNU6-1303P-201ENST00000364841 107 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 RNU6-1127P-201ENST00000384580 107 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 U8.17-201ENST00000391292 132 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 RNU5A-5P-201ENST00000411054 116 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AL663109.1-201ENST00000411498 844 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 MTCO3P19-201ENST00000415864 321 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AC010486.3-201ENST00000511602 785 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AC046134.1-201ENST00000514454 666 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 RNU7-156P-201ENST00000517214 74 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 MIR7844-201ENST00000616161 122 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AC009248.2-201ENST00000619826 254 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 SNORA27.1-201ENST00000362604 124 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 RNA5SP494-201ENST00000410653 129 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AC131281.1-201ENST00000522984 164 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 MTND1P24-201ENST00000552175 861 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AC005776.1-201ENST00000603164 290 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AC008608.1-201ENST00000603910 127 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 RNU6-1192P-201ENST00000612197 107 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 AC010332.2-201ENST00000613083 1904 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 RNU6-489P-201ENST00000618289 107 ntBASIC-0.45□□□□□ -2.48
CHD9Q3L8U1 MIR148A-201ENST00000362215 68 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 SNORD87-201ENST00000364849 89 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 RNU6-187P-201ENST00000384139 106 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.598-201ENST00000410480 95 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 RPL22P17-201ENST00000438729 315 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 EPS15P1-201ENST00000448836 336 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.672-201ENST00000516289 104 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 RNU6-612P-201ENST00000516909 102 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 MTND4P33-201ENST00000556706 766 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 RNU6-433P-201ENST00000363216 104 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 SNORD114-25-201ENST00000363742 72 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 MIR570-201ENST00000384917 97 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 AL136310.1-201ENST00000404926 654 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 BX276092.1-201ENST00000427368 251 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 AC133104.1-201ENST00000429100 218 ntBASIC-0.46□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 193.4 ms