Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CYCTP-201ENST00000504253 315 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.51□□□□□ -2.33
FOXA1P55317 AC018638.8-201ENST00000588755 281 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AL512605.2-201ENST00000592972 256 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AC120024.3-201ENST00000603167 156 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AC009229.3-201ENST00000608056 282 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AC090517.2-201ENST00000614966 680 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 AL008636.1-201ENST00000625038 1018 ntBASIC0.51□□□□□ -2.33
FOXA1P55317 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.5□□□□□ -2.33
FOXA1P55317 SNORD68-201ENST00000363214 84 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 Y_RNA.243-201ENST00000364481 109 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 RNU6-601P-201ENST00000384540 107 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 MIR605-201ENST00000385078 83 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 RNU6-510P-201ENST00000391239 108 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 RNA5SP193-201ENST00000410353 107 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 RNA5SP511-201ENST00000410487 115 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 AL354751.2-201ENST00000415471 210 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA1P55317 RPEP5-201ENST00000441137 268 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA1P55317 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA1P55317 SUMO1P2-201ENST00000452524 304 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 ELOCP24-201ENST00000456370 334 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 RNA5SP255-201ENST00000516370 107 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 Y_RNA.708-201ENST00000516950 96 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA1P55317 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
FOXA1P55317 uc_338.17-201ENST00000619633 179 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 AC027279.3-201ENST00000625055 122 ntBASIC0.5□□□□□ -2.33
FOXA1P55317 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.49□□□□□ -2.33
FOXA1P55317 CASC19-280ENST00000642102 1351 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 SNORD114-7-201ENST00000362520 77 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 RNU6-1301P-201ENST00000362724 104 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 Y_RNA.86-201ENST00000363020 111 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 Y_RNA.404-201ENST00000383978 102 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 MIR548F1-201ENST00000408667 84 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 SNORD12B-201ENST00000410433 91 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.49□□□□□ -2.33
FOXA1P55317 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.49□□□□□ -2.33
FOXA1P55317 MTND3P10-201ENST00000450967 341 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 AC114811.1-201ENST00000507207 168 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 SNORA70.12-201ENST00000516084 153 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 AC023442.1-201ENST00000531247 422 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.49□□□□□ -2.33
FOXA1P55317 MIR1244-1-201ENST00000612829 85 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.49□□□□□ -2.33
FOXA1P55317 AL591926.4-201ENST00000616895 298 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 MIR1244-3-201ENST00000635744 85 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 MIR1244-2-201ENST00000636449 85 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 MIR1244-4-202ENST00000636813 85 ntBASIC0.49□□□□□ -2.33
FOXA1P55317 RNA5SP264-201ENST00000363115 107 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 SNORD115-30-201ENST00000364117 82 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 Y_RNA.318-201ENST00000365131 97 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 Y_RNA.361-201ENST00000365515 120 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 RNU6-1310P-201ENST00000384153 107 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 MIR452-201ENST00000385020 85 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 MIR1298-201ENST00000408783 112 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 Y_RNA.621-201ENST00000411065 96 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 MTND3P8-201ENST00000412909 339 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.48□□□□□ -2.33
FOXA1P55317 AL162725.1-201ENST00000435405 301 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 FABP5P4-201ENST00000437203 171 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.48□□□□□ -2.33
FOXA1P55317 RNU6-408P-201ENST00000515910 100 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 RNU6-1337P-201ENST00000516525 95 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.48□□□□□ -2.33
FOXA1P55317 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.48□□□□□ -2.33
FOXA1P55317 AC092794.2-201ENST00000620933 563 ntBASIC0.48□□□□□ -2.33
FOXA1P55317 RNA5SP347-201ENST00000362445 119 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 Y_RNA.330-201ENST00000365230 109 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 Y_RNA.339-201ENST00000365325 102 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 Y_RNA.482-201ENST00000384377 111 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 RNU6-1215P-201ENST00000384441 102 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 AC093019.1-201ENST00000443135 252 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 RPS20P10-201ENST00000451209 253 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 AC107399.1-201ENST00000451226 265 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 AC105313.1-201ENST00000509121 353 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 RNU6-718P-201ENST00000516166 105 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 RNU2-12P-201ENST00000517216 168 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.47□□□□□ -2.33
FOXA1P55317 MIR4711-201ENST00000578274 70 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 AC004467.1-201ENST00000615678 330 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 PISRT1.1-201ENST00000616930 107 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 AC023934.1-201ENST00000574529 2389 ntBASIC0.47□□□□□ -2.33
FOXA1P55317 Y_RNA.88-201ENST00000363029 99 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 SNORD114-23-201ENST00000363536 72 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 RNU6-961P-201ENST00000363893 105 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 U8.5-201ENST00000364528 136 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 MIR193B-201ENST00000384907 83 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 MIR516B2-201ENST00000385190 85 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 MIR1277-201ENST00000408536 78 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 RPS26P5-201ENST00000418544 335 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 AC098934.3-201ENST00000430450 190 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 AL035398.1-201ENST00000430869 322 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 AC005534.2-201ENST00000431047 433 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 RPL23AP50-201ENST00000434149 455 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.46□□□□□ -2.34
FOXA1P55317 RPL17P19-201ENST00000489069 552 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 AP003716.2-201ENST00000528260 108 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms