Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HOXD9P28356 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
HOXD9P28356 Y_RNA.24-201ENST00000362508 103 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 RNU4-84P-201ENST00000364200 139 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 RNU6-407P-201ENST00000365280 104 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 Y_RNA.398-201ENST00000383952 99 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 RNU6-578P-201ENST00000390980 103 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 EBAG9P1-201ENST00000418955 543 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXD9P28356 HSPE1P21-201ENST00000438283 308 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AC011753.1-201ENST00000451001 220 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.16□□□□□ -2.06
HOXD9P28356 UBL5P3-201ENST00000475112 231 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AC104435.1-201ENST00000483483 166 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AC117454.1-201ENST00000491120 168 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 Y_RNA.797-201ENST00000515977 94 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 RNU7-193P-201ENST00000516723 65 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 RNU7-116P-201ENST00000516940 62 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 MTND5P41-201ENST00000517498 206 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 NDUFA5P6-201ENST00000542110 379 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXD9P28356 AC127455.1-201ENST00000565496 145 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AC104984.5-201ENST00000586878 94 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AL391903.3-201ENST00000612158 163 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AC022202.1-201ENST00000613515 211 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 U2.20-201ENST00000613956 192 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AC068647.2-201ENST00000637380 353 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
HOXD9P28356 ZNF720P1-201ENST00000562403 1939 ntBASIC2.16□□□□□ -2.06
HOXD9P28356 AL356292.1-201ENST00000283110 373 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 RNU6-743P-201ENST00000364151 106 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 RNU6-969P-201ENST00000383900 105 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 Y_RNA.572-201ENST00000384757 98 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 SNORA36B-201ENST00000410438 131 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 AL162725.1-201ENST00000435405 301 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
HOXD9P28356 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXD9P28356 SCARNA8-201ENST00000515924 131 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 RNU6-991P-201ENST00000516168 107 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 AC026271.5-201ENST00000577873 130 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 MIR4724-201ENST00000579485 89 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 AC012640.5-201ENST00000623897 319 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 AP006437.1-201ENST00000641440 3685 ntBASIC2.15□□□□□ -2.07
HOXD9P28356 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXD9P28356 AL157777.2-201ENST00000258070 137 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
HOXD9P28356 MIR613-201ENST00000385248 95 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 SNORD23.1-201ENST00000408212 104 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 MIR1289-2-201ENST00000408360 111 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 AL445646.1-201ENST00000431784 216 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 HMGN2P3-201ENST00000433603 273 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 HMGN2P5-201ENST00000436882 273 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXD9P28356 RNU7-121P-201ENST00000516604 62 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 SNORA31.15-201ENST00000516771 132 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXD9P28356 MIR4431-201ENST00000579990 94 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 MIR3124-201ENST00000582636 67 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 POLR3GP1-201ENST00000594073 261 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 AL031274.2-201ENST00000599419 203 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 MTND1P7-201ENST00000632801 297 ntBASIC2.14□□□□□ -2.07
HOXD9P28356 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD9P28356 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD9P28356 Y_RNA.8-201ENST00000362353 102 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 RNU1-22P-201ENST00000363334 158 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 RNU6-674P-201ENST00000363831 107 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 Y_RNA.357-201ENST00000365487 109 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 RNU6-1228P-201ENST00000391014 107 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 MIR1278-201ENST00000408753 81 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 RNA5SP511-201ENST00000410487 115 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 SRIP3-201ENST00000413200 219 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 SEPT7P4-201ENST00000437076 306 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.13□□□□□ -2.07
HOXD9P28356 RPS27P22-201ENST00000478056 241 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 RNU6-453P-201ENST00000516819 85 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 RNA5SP137-201ENST00000516833 135 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 AC027419.1-201ENST00000522976 328 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 AC109810.1-201ENST00000534066 224 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.13□□□□□ -2.07
HOXD9P28356 AC015720.1-201ENST00000565251 277 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 AL049779.4-201ENST00000604500 156 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 U6.73-201ENST00000619194 103 ntBASIC2.13□□□□□ -2.07
HOXD9P28356 AC005336.3-201ENST00000623833 2679 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 MIRLET7G-201ENST00000362280 84 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 MIR367-201ENST00000362299 68 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 Y_RNA.229-201ENST00000364347 113 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 RNY3P5-201ENST00000384127 102 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 RNU6-239P-201ENST00000390990 99 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 AC060773.1-201ENST00000421698 310 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 AL353689.1-201ENST00000438895 199 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD9P28356 AC097462.1-201ENST00000514125 324 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 RNU6-346P-201ENST00000516288 111 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 RNU6-63P-201ENST00000516690 95 ntBASIC2.12□□□□□ -2.07
HOXD9P28356 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXD9P28356 Y_RNA.99-201ENST00000363138 105 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 RNU6-704P-201ENST00000364162 103 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 RNU1-96P-201ENST00000364163 162 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 SNORD113-1-201ENST00000365321 69 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms