| CPA3 | P15088 | ZNF260-205 | ENST00000593142 | 4047 nt | APPRIS P1 TSL 1 (best) BASIC | 1.11 | □□□□□ -2.23 | | |
| CPA3 | P15088 | Y_RNA.230-201 | ENST00000364348 | 109 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | Y_RNA.338-201 | ENST00000365320 | 114 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | Y_RNA.428-201 | ENST00000384078 | 102 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | Y_RNA.570-201 | ENST00000384750 | 101 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AL451046.2-201 | ENST00000403074 | 277 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | RNU6ATAC15P-201 | ENST00000408279 | 121 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | BTF3P4-201 | ENST00000418852 | 495 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | MTCO2P27-201 | ENST00000420740 | 428 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC245047.7-201 | ENST00000440265 | 293 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | OR2A41P-201 | ENST00000473586 | 105 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | MIR4801-201 | ENST00000582704 | 82 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | MIR4762-201 | ENST00000585261 | 75 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC120024.3-201 | ENST00000603167 | 156 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | RBM11P1-201 | ENST00000604951 | 799 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| CPA3 | P15088 | Y_RNA.5-201 | ENST00000362334 | 102 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | RNU1-124P-201 | ENST00000363861 | 145 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | U8.5-201 | ENST00000364528 | 136 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | RNY3P14-201 | ENST00000384309 | 102 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | RNU6ATAC8P-201 | ENST00000408460 | 126 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | PIGPP3-201 | ENST00000425307 | 415 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC093019.1-201 | ENST00000443135 | 252 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | snoU13.25-201 | ENST00000458945 | 104 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC093852.1-201 | ENST00000503587 | 266 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | CYCTP-201 | ENST00000504253 | 315 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | RNU4-77P-201 | ENST00000516692 | 156 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | SNORD116.3-201 | ENST00000517176 | 78 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | ZNF436-AS1-205 | ENST00000518600 | 376 nt | TSL 5 BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC087518.1-201 | ENST00000524098 | 187 nt | TSL 3 BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC011604.1-201 | ENST00000545978 | 196 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | MIR5188-201 | ENST00000583467 | 113 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | snoU13.31-201 | ENST00000607291 | 104 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC010205.1-201 | ENST00000616668 | 449 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AL008636.1-201 | ENST00000625038 | 1018 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC027279.3-201 | ENST00000625055 | 122 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | AC112487.2-201 | ENST00000637950 | 304 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| CPA3 | P15088 | ZNF518A-210 | ENST00000624776 | 7994 nt | APPRIS P1 TSL 1 (best) BASIC | 1.09 | □□□□□ -2.24 | | |
| CPA3 | P15088 | CCDC68-202 | ENST00000432185 | 4014 nt | APPRIS P1 TSL 1 (best) BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU4-79P-201 | ENST00000362764 | 141 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | SNORD68-201 | ENST00000363214 | 84 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | SNORA7.1-201 | ENST00000363750 | 139 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU6-324P-201 | ENST00000363957 | 106 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.252-201 | ENST00000364556 | 101 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | MIR891A-201 | ENST00000401237 | 79 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RPL23AP36-201 | ENST00000413895 | 458 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AL603825.1-201 | ENST00000438481 | 80 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AC092473.1-201 | ENST00000441098 | 221 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | MTND5P20-201 | ENST00000448677 | 143 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RPS20P10-201 | ENST00000451209 | 253 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU7-95P-201 | ENST00000459222 | 64 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AC114811.1-201 | ENST00000507207 | 168 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU6-322P-201 | ENST00000516010 | 103 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU7-40P-201 | ENST00000516397 | 64 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RN7SKP295-201 | ENST00000517264 | 153 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | HSPE1P19-201 | ENST00000603327 | 295 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | SNORD58B-201 | ENST00000607313 | 66 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.58-201 | ENST00000362807 | 102 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.154-201 | ENST00000363624 | 102 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNY3P1-201 | ENST00000365085 | 102 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.315-201 | ENST00000365117 | 102 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU6-1175P-201 | ENST00000365200 | 107 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.329-201 | ENST00000365209 | 107 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.356-201 | ENST00000365475 | 113 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNY3-201 | ENST00000365484 | 102 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU6-910P-201 | ENST00000390844 | 107 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU6-1009P-201 | ENST00000390996 | 107 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AL365434.1-201 | ENST00000412362 | 380 nt | TSL 3 BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AP1B1P2-201 | ENST00000416196 | 106 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | MCFD2P1-201 | ENST00000417812 | 300 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | SNORA70.22-201 | ENST00000517160 | 124 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | MIR548S-201 | ENST00000581352 | 82 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | MIR4295-201 | ENST00000585286 | 85 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AC092447.9-201 | ENST00000603395 | 144 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AL391987.6-201 | ENST00000305671 | 199 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | SNORD81.1-201 | ENST00000363064 | 77 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.253-201 | ENST00000364562 | 112 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.458-201 | ENST00000384240 | 102 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU6-163P-201 | ENST00000384396 | 106 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.621-201 | ENST00000411065 | 96 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AC069079.1-201 | ENST00000419889 | 400 nt | TSL 3 BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RPS26P48-201 | ENST00000491713 | 339 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | SNORA31.4-201 | ENST00000516049 | 129 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU6-947P-201 | ENST00000516264 | 106 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | MIR4498-201 | ENST00000577599 | 66 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AC032019.2-201 | ENST00000584916 | 403 nt | TSL 5 BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | FAM106DP-201 | ENST00000586416 | 501 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AL357312.1-201 | ENST00000603879 | 298 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AL096861.1-201 | ENST00000610899 | 123 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | DLEU2_2.2-201 | ENST00000615474 | 90 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AL157834.3-201 | ENST00000615543 | 103 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | AL353770.2-201 | ENST00000620024 | 78 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | PTPN22-203 | ENST00000460620 | 1794 nt | TSL 1 (best) BASIC | 1.06 | □□□□□ -2.24 | | |
| CPA3 | P15088 | MGAT4C-209 | ENST00000611864 | 25116 nt | APPRIS P1 TSL 5 BASIC | 1.05 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.336-201 | ENST00000365307 | 109 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU1-115P-201 | ENST00000365329 | 160 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| CPA3 | P15088 | RNU6-1105P-201 | ENST00000384774 | 107 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| CPA3 | P15088 | MIR522-201 | ENST00000385071 | 87 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| CPA3 | P15088 | LINC01755-201 | ENST00000455010 | 453 nt | TSL 2 BASIC | 1.05 | □□□□□ -2.24 | | |
| CPA3 | P15088 | SNORD79.1-201 | ENST00000516069 | 84 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| CPA3 | P15088 | Y_RNA.702-201 | ENST00000516843 | 96 nt | BASIC | 1.05 | □□□□□ -2.24 | | |