Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORD50B-201ENST00000364995 70 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 RNU6-1310P-201ENST00000384153 107 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 SNORD28B-201ENST00000390993 75 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 RNU6-1068P-201ENST00000410958 103 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 snoU13.21-201ENST00000459368 105 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 Y_RNA.638-201ENST00000459374 113 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-0.08□□□□□ -2.42
LIMS3P0CW19 RNA5SP94-201ENST00000516917 108 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 AP003327.1-201ENST00000529684 127 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 MIR4771-2-201ENST00000577758 74 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 MIR4771-1-201ENST00000582617 74 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 MIR4768-201ENST00000585270 74 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 AP000753.3-201ENST00000604083 169 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 Y_RNA.368-201ENST00000365547 113 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC-0.09□□□□□ -2.42
LIMS3P0CW19 SEPT14P3-201ENST00000439401 183 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 AL732372.2-207ENST00000445840 183 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 UBE2V1P7-201ENST00000446395 340 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 SEPT14P2-201ENST00000453405 183 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 RNU6-329P-201ENST00000459618 107 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 SEPT14P4-201ENST00000513445 186 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 FO082796.1-201ENST00000523795 183 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 NDUFAF4P1-201ENST00000559425 519 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC-0.09□□□□□ -2.42
LIMS3P0CW19 AC007742.2-201ENST00000618226 398 ntBASIC-0.09□□□□□ -2.42
LIMS3P0CW19 SNORD45.3-201ENST00000363836 72 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 Y_RNA.212-201ENST00000364177 102 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 RNU6-879P-201ENST00000364328 108 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 SNORD114-9-201ENST00000364370 72 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 SNORD38C-201ENST00000384381 69 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 RNU6-306P-201ENST00000384617 107 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-0.1□□□□□ -2.43
LIMS3P0CW19 RNU7-56P-201ENST00000458744 62 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 SNORA25.10-201ENST00000515926 124 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 RNA5SP436-201ENST00000516020 115 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 RNU4-77P-201ENST00000516692 156 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 AC112693.2-201ENST00000556538 232 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 MIR4676-201ENST00000583078 72 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 MIR3672-201ENST00000584290 82 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 SNORA25.18-201ENST00000607153 114 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 DLEU2_1.1-201ENST00000612089 120 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 DLEU2_1.2-201ENST00000614667 120 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 AC023510.2-201ENST00000622162 746 ntBASIC-0.1□□□□□ -2.43
LIMS3P0CW19 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.1□□□□□ -2.43
LIMS3P0CW19 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.1□□□□□ -2.43
LIMS3P0CW19 MIR411-201ENST00000362239 96 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 RNA5SP214-201ENST00000363378 118 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 Y_RNA.364-201ENST00000365532 101 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 SNORA51.10-201ENST00000384418 136 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.11□□□□□ -2.43
LIMS3P0CW19 MIR190B-201ENST00000401119 79 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 SNORD100-201ENST00000408573 76 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 Y_RNA.615-201ENST00000410769 117 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.11□□□□□ -2.43
LIMS3P0CW19 RNU7-66P-201ENST00000459469 62 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 AC093534.1-201ENST00000504977 132 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 RNA5SP227-201ENST00000516184 113 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC-0.11□□□□□ -2.43
LIMS3P0CW19 MIR4264-201ENST00000583520 66 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 AC010525.2-201ENST00000590920 195 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 AC023932.2-201ENST00000603176 175 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 DISC2.1-201ENST00000612827 205 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 AC240442.1-201ENST00000616055 283 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 AC010487.4-201ENST00000637027 61 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 MIR371B-201ENST00000638082 66 ntBASIC-0.11□□□□□ -2.43
LIMS3P0CW19 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.11□□□□□ -2.43
LIMS3P0CW19 SNORD14E-201ENST00000364009 85 ntBASIC-0.12□□□□□ -2.43
LIMS3P0CW19 SNORD116-11-201ENST00000383882 92 ntBASIC-0.12□□□□□ -2.43
LIMS3P0CW19 SNRPGP10-201ENST00000432323 225 ntBASIC-0.12□□□□□ -2.43
LIMS3P0CW19 SNORA40.9-201ENST00000515895 93 ntBASIC-0.12□□□□□ -2.43
LIMS3P0CW19 SNORA4-201ENST00000584302 138 ntBASIC-0.12□□□□□ -2.43
LIMS3P0CW19 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC-0.12□□□□□ -2.43
LIMS3P0CW19 NAA50-211ENST00000630058 177 ntTSL 5 BASIC-0.12□□□□□ -2.43
LIMS3P0CW19 RNA5SP432-201ENST00000362480 116 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 RNY1P16-201ENST00000363063 111 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 SNORD115-30-201ENST00000364117 82 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 SNORA8.2-201ENST00000384372 139 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 Y_RNA.537-201ENST00000384626 109 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 RNU6-205P-201ENST00000390858 107 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 MTCO2P33-201ENST00000402100 465 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 AL353997.1-201ENST00000432936 108 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 Y_RNA.693-201ENST00000516641 110 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-0.13□□□□□ -2.43
LIMS3P0CW19 MIR6863-201ENST00000636112 90 ntBASIC-0.13□□□□□ -2.43
LIMS3P0CW19 MIR570-201ENST00000384917 97 ntBASIC-0.14□□□□□ -2.43
LIMS3P0CW19 MIR938-201ENST00000401216 83 ntBASIC-0.14□□□□□ -2.43
LIMS3P0CW19 AC015818.7-201ENST00000428754 109 ntBASIC-0.14□□□□□ -2.43
LIMS3P0CW19 AC087499.7-201ENST00000441958 109 ntBASIC-0.14□□□□□ -2.43
LIMS3P0CW19 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-0.14□□□□□ -2.43
LIMS3P0CW19 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-0.14□□□□□ -2.43
LIMS3P0CW19 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.14□□□□□ -2.43
LIMS3P0CW19 RNU6-830P-201ENST00000516353 107 ntBASIC-0.14□□□□□ -2.43
LIMS3P0CW19 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.14□□□□□ -2.43
LIMS3P0CW19 MIR6515-201ENST00000619843 57 ntBASIC-0.14□□□□□ -2.43
LIMS3P0CW19 IST1-227ENST00000626438 126 ntTSL 5 BASIC-0.14□□□□□ -2.43
LIMS3P0CW19 Y_RNA.414-201ENST00000384011 101 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 Y_RNA.557-201ENST00000384680 107 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-0.15□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 195.2 ms