Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SNORA1B-201ENST00000362535 133 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 RNY3P11-201ENST00000364153 102 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 U8.16-201ENST00000391279 133 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 DYNLT3P2-201ENST00000442517 295 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 Y_RNA.653-201ENST00000459091 95 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 U8.19-201ENST00000459095 133 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 AC087343.1-201ENST00000477341 475 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 HMGN1P7-201ENST00000491722 313 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 PRDX4P1-201ENST00000507189 574 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 AC113139.1-201ENST00000605049 239 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 AC122108.2-201ENST00000611946 526 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 AC004467.1-201ENST00000615678 330 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 AC091895.1-201ENST00000624494 256 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 AC005592.1-201ENST00000566527 1640 ntBASIC1.47□□□□□ -2.17
CHMP4AQ9BY43 RNU6-833P-201ENST00000363486 107 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 RNU5A-5P-201ENST00000411054 116 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 MTCO3P10-201ENST00000455912 772 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 AL049830.1-201ENST00000468034 425 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 CYCTP-201ENST00000504253 315 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 RNU6-470P-201ENST00000515954 104 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 SNORD79.1-201ENST00000516069 84 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 RNU6-63P-201ENST00000516690 95 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 RNU7-4P-201ENST00000516961 62 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 AC144568.1-201ENST00000520139 137 ntBASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
CHMP4AQ9BY43 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 RNU6-961P-201ENST00000363893 105 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 RNU6-1105P-201ENST00000384774 107 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 MIR891A-201ENST00000401237 79 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 AC138393.2-201ENST00000414742 246 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 MRPL35P3-201ENST00000421557 364 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 RPS29P29-201ENST00000456396 171 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 SNORA20.3-201ENST00000516880 132 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 AL355073.2-201ENST00000612106 557 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 AC133104.2-201ENST00000615272 193 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 AC099654.14-201ENST00000638599 341 ntBASIC1.45□□□□□ -2.18
CHMP4AQ9BY43 Y_RNA.314-201ENST00000365114 102 ntBASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 RNU1-36P-201ENST00000365130 165 ntBASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 Y_RNA.474-201ENST00000384341 102 ntBASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 AC093850.1-201ENST00000454121 251 ntBASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 AC048334.1-201ENST00000477975 159 ntBASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 RNU6-917P-201ENST00000516294 104 ntBASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 RNU6-1096P-201ENST00000517089 102 ntBASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 MTND4LP32-201ENST00000636111 270 ntBASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CHMP4AQ9BY43 Y_RNA.243-201ENST00000364481 109 ntBASIC1.43□□□□□ -2.18
CHMP4AQ9BY43 Y_RNA.259-201ENST00000364619 101 ntBASIC1.43□□□□□ -2.18
CHMP4AQ9BY43 RNU6-1187P-201ENST00000364771 110 ntBASIC1.43□□□□□ -2.18
CHMP4AQ9BY43 RNU6-1297P-201ENST00000384415 104 ntBASIC1.43□□□□□ -2.18
CHMP4AQ9BY43 RPS29P28-201ENST00000446439 141 ntBASIC1.43□□□□□ -2.18
CHMP4AQ9BY43 Y_RNA.142-201ENST00000363491 102 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 RNU6-53P-201ENST00000365367 106 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 RNU6-117P-201ENST00000365415 107 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 MIR15B-201ENST00000385045 98 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 MIR628-201ENST00000385229 95 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 MRPS18CP6-201ENST00000423587 223 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 FCF1P4-201ENST00000448326 183 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 AC093852.1-201ENST00000503587 266 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 RNU6-947P-201ENST00000516264 106 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 AC055872.1-201ENST00000570978 278 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 AC006380.1-201ENST00000603598 186 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 AC004832.4-201ENST00000608952 331 ntBASIC1.42□□□□□ -2.18
CHMP4AQ9BY43 Y_RNA.164-201ENST00000363709 102 ntBASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 Y_RNA.390-201ENST00000383932 102 ntBASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 MIR452-201ENST00000385020 85 ntBASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 Y_RNA.621-201ENST00000411065 96 ntBASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 RNU2-64P-201ENST00000411315 191 ntBASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 RBMX2P4-201ENST00000441256 376 ntBASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 AC022616.4-201ENST00000522985 181 ntBASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 AC090821.2-201ENST00000523552 176 ntBASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.41□□□□□ -2.18
CHMP4AQ9BY43 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.4□□□□□ -2.19
CHMP4AQ9BY43 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.4□□□□□ -2.19
CHMP4AQ9BY43 AC093019.1-201ENST00000443135 252 ntBASIC1.4□□□□□ -2.19
CHMP4AQ9BY43 ELOCP24-201ENST00000456370 334 ntBASIC1.4□□□□□ -2.19
CHMP4AQ9BY43 RNU2-12P-201ENST00000517216 168 ntBASIC1.4□□□□□ -2.19
CHMP4AQ9BY43 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.4□□□□□ -2.19
CHMP4AQ9BY43 AC005730.3-201ENST00000583067 366 ntBASIC1.4□□□□□ -2.19
CHMP4AQ9BY43 AC011476.5-201ENST00000615594 130 ntBASIC1.4□□□□□ -2.19
CHMP4AQ9BY43 SNORD115-30-201ENST00000364117 82 ntBASIC1.39□□□□□ -2.19
CHMP4AQ9BY43 SNORA22-201ENST00000383907 134 ntBASIC1.39□□□□□ -2.19
CHMP4AQ9BY43 Y_RNA.384-201ENST00000383909 102 ntBASIC1.39□□□□□ -2.19
CHMP4AQ9BY43 Y_RNA.387-201ENST00000383918 102 ntBASIC1.39□□□□□ -2.19
CHMP4AQ9BY43 SNORA22C-201ENST00000384614 134 ntBASIC1.39□□□□□ -2.19
CHMP4AQ9BY43 SNORD78.2-201ENST00000391076 69 ntBASIC1.39□□□□□ -2.19
CHMP4AQ9BY43 RNA5SP511-201ENST00000410487 115 ntBASIC1.39□□□□□ -2.19
CHMP4AQ9BY43 AC096644.2-201ENST00000429278 159 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms