Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNU1-93P-201ENST00000364704 169 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 MIR526A1-201ENST00000384897 85 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 MIR891A-201ENST00000401237 79 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 MTND4P17-201ENST00000470444 350 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 CYCTP-201ENST00000504253 315 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 RNU6-408P-201ENST00000515910 100 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 SNORD111.1-201ENST00000516421 86 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 RNU2-12P-201ENST00000517216 168 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 FAM106DP-201ENST00000586416 501 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 AC068790.6-201ENST00000602558 258 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 AC120024.3-201ENST00000603167 156 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.91□□□□□ -2.26
VPS35Q96QK1 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
VPS35Q96QK1 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
VPS35Q96QK1 RNU6-833P-201ENST00000363486 107 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 SNORA80D-201ENST00000384488 135 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 RNA5SP511-201ENST00000410487 115 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 RNU4-14P-201ENST00000410858 122 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 AL354751.2-201ENST00000415471 210 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 MTND4P28-201ENST00000426217 387 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 FGF7P6-202ENST00000451282 293 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 LINC01399-202ENST00000458450 244 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 SNORD124-201ENST00000459577 104 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 MIR4661-201ENST00000582720 75 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.9□□□□□ -2.27
VPS35Q96QK1 AC004832.4-201ENST00000608952 331 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 MIR6504-201ENST00000613520 61 ntBASIC0.9□□□□□ -2.27
VPS35Q96QK1 RNU6-961P-201ENST00000363893 105 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 RNU6-163P-201ENST00000384396 106 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 Y_RNA.577-201ENST00000384794 101 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 MIR625-201ENST00000385047 85 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 SNORA69.1-201ENST00000390904 137 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 AL162725.1-201ENST00000435405 301 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 Y_RNA.635-201ENST00000459041 101 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.89□□□□□ -2.27
VPS35Q96QK1 RNU6-120P-201ENST00000516077 103 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 SNORA70.12-201ENST00000516084 153 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 RNU6-1337P-201ENST00000516525 95 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 Y_RNA.691-201ENST00000516611 103 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 AC136932.1-201ENST00000574771 208 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 AL020996.3-201ENST00000606617 222 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 AL096861.1-201ENST00000610899 123 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 AC004467.1-201ENST00000615678 330 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 AC087588.2-201ENST00000617667 426 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 AC098679.4-201ENST00000624241 654 ntBASIC0.89□□□□□ -2.27
VPS35Q96QK1 CASC19-280ENST00000642102 1351 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
VPS35Q96QK1 RNU6-845P-201ENST00000362578 103 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 SNORD68-201ENST00000363214 84 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 Y_RNA.160-201ENST00000363677 92 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 SNORD114-24-201ENST00000365029 72 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 SNORA25.9-201ENST00000365087 128 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 RNU6-969P-201ENST00000383900 105 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 RNU6-926P-201ENST00000384075 107 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 Y_RNA.592-201ENST00000410274 109 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 RNU6-370P-201ENST00000411008 104 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 Y_RNA.621-201ENST00000411065 96 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 POLR2J4-204ENST00000418424 324 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 PIGPP3-201ENST00000425307 415 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.88□□□□□ -2.27
VPS35Q96QK1 RPS4XP11-201ENST00000446897 772 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 RPS26P48-201ENST00000491713 339 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 Y_RNA.676-201ENST00000516393 96 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 AC055872.1-201ENST00000570978 278 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 AC136443.5-201ENST00000603741 370 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 AC027279.3-201ENST00000625055 122 ntBASIC0.88□□□□□ -2.27
VPS35Q96QK1 AC008163.1-202ENST00000636004 2889 ntBASIC0.87□□□□□ -2.27
VPS35Q96QK1 MIR373-201ENST00000362273 69 ntBASIC0.87□□□□□ -2.27
VPS35Q96QK1 Y_RNA.166-201ENST00000363730 102 ntBASIC0.87□□□□□ -2.27
VPS35Q96QK1 Y_RNA.279-201ENST00000364763 95 ntBASIC0.87□□□□□ -2.27
VPS35Q96QK1 Y_RNA.336-201ENST00000365307 109 ntBASIC0.87□□□□□ -2.27
VPS35Q96QK1 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.87□□□□□ -2.27
VPS35Q96QK1 RNU6-264P-201ENST00000517134 104 ntBASIC0.87□□□□□ -2.27
VPS35Q96QK1 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.87□□□□□ -2.27
VPS35Q96QK1 AC006380.1-201ENST00000603598 186 ntBASIC0.87□□□□□ -2.27
VPS35Q96QK1 AL008636.1-201ENST00000625038 1018 ntBASIC0.87□□□□□ -2.27
VPS35Q96QK1 RNU6-1105P-201ENST00000384774 107 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 MIR200A-201ENST00000384875 90 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 MIR452-201ENST00000385020 85 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 SNORA75.2-201ENST00000391138 150 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 SNORA75.3-201ENST00000391231 150 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 SNORA75.6-201ENST00000391318 127 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 AL031003.1-201ENST00000404229 172 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 RNU6-1156P-201ENST00000410365 100 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 Y_RNA.646-201ENST00000410980 101 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.86□□□□□ -2.27
VPS35Q96QK1 RPEP5-201ENST00000441137 268 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 AC245047.8-201ENST00000456455 284 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 AC114811.1-201ENST00000507207 168 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 PDCD5P2-201ENST00000507570 312 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 MIR3973-201ENST00000579824 107 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
VPS35Q96QK1 FAM71BP1-201ENST00000604431 523 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 AL391903.3-201ENST00000612158 163 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
VPS35Q96QK1 AL591926.4-201ENST00000616895 298 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 AC139792.2-201ENST00000624218 587 ntBASIC0.86□□□□□ -2.27
VPS35Q96QK1 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
VPS35Q96QK1 RNU6-1188P-201ENST00000363795 107 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms