Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 AC006380.1-201ENST00000603598 186 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 AC004467.1-201ENST00000615678 330 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
NIPAL3Q6P499 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.88□□□□□ -2.27
NIPAL3Q6P499 MIR337-201ENST00000362281 93 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 RNU4-38P-201ENST00000364472 129 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.577-201ENST00000384794 101 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 MIR526A1-201ENST00000384897 85 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 RNA5SP511-201ENST00000410487 115 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 MTND1P4-201ENST00000435196 415 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.88□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.635-201ENST00000459041 101 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 SNORD124-201ENST00000459577 104 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 RNU2-12P-201ENST00000517216 168 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.88□□□□□ -2.27
NIPAL3Q6P499 AC004832.4-201ENST00000608952 331 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 AC027279.3-201ENST00000625055 122 ntBASIC0.88□□□□□ -2.27
NIPAL3Q6P499 AC008163.1-202ENST00000636004 2889 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 SNORD115-30-201ENST00000364117 82 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 RNU6-1080P-201ENST00000383982 107 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 RNU6-926P-201ENST00000384075 107 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 MIR200A-201ENST00000384875 90 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 POLR2J4-204ENST00000418424 324 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 PIGPP3-201ENST00000425307 415 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 AL162725.1-201ENST00000435405 301 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 RNU6-1337P-201ENST00000516525 95 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.87□□□□□ -2.27
NIPAL3Q6P499 CASC19-280ENST00000642102 1351 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 SNORD114-27-201ENST00000363766 70 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 RNU6-961P-201ENST00000363893 105 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.592-201ENST00000410274 109 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 RNU6-1156P-201ENST00000410365 100 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.86□□□□□ -2.27
NIPAL3Q6P499 FCF1P4-201ENST00000448326 183 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 PDCD5P2-201ENST00000507570 312 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.86□□□□□ -2.27
NIPAL3Q6P499 AL096861.1-201ENST00000610899 123 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
NIPAL3Q6P499 AC087588.2-201ENST00000617667 426 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 AC098679.4-201ENST00000624241 654 ntBASIC0.86□□□□□ -2.27
NIPAL3Q6P499 RNU6-845P-201ENST00000362578 103 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.160-201ENST00000363677 92 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.336-201ENST00000365307 109 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.361-201ENST00000365515 120 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 MIR452-201ENST00000385020 85 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 RNU6-370P-201ENST00000411008 104 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 RPS4XP11-201ENST00000446897 772 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 AC245047.8-201ENST00000456455 284 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 MTND4P17-201ENST00000470444 350 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 MIR4781-201ENST00000585250 76 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 AL020996.3-201ENST00000606617 222 ntBASIC0.85□□□□□ -2.27
NIPAL3Q6P499 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.166-201ENST00000363730 102 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 RNU1-36P-201ENST00000365130 165 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 RNU6-969P-201ENST00000383900 105 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 SNORA75.6-201ENST00000391318 127 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 MIR942-201ENST00000401111 86 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 AL031003.1-201ENST00000404229 172 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 RNU4-14P-201ENST00000410858 122 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.84□□□□□ -2.27
NIPAL3Q6P499 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.84□□□□□ -2.27
NIPAL3Q6P499 FGF7P6-202ENST00000451282 293 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 RNU7-90P-201ENST00000459216 62 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 RNU7-21P-201ENST00000459430 62 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 RPS26P48-201ENST00000491713 339 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.84□□□□□ -2.27
NIPAL3Q6P499 AC114811.1-201ENST00000507207 168 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 RNU6-120P-201ENST00000516077 103 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 ACA64.5-201ENST00000516207 127 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.691-201ENST00000516611 103 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 RNU7-4P-201ENST00000516961 62 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 AC144568.1-201ENST00000520139 137 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 MIR5690-201ENST00000583739 73 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 AL591926.4-201ENST00000616895 298 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 AL008636.1-201ENST00000625038 1018 ntBASIC0.84□□□□□ -2.27
NIPAL3Q6P499 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.84□□□□□ -2.27
NIPAL3Q6P499 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
NIPAL3Q6P499 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
NIPAL3Q6P499 RNU6-1187P-201ENST00000364771 110 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 SNORD116-13-201ENST00000384408 92 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 MRPS18CP6-201ENST00000423587 223 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 RPEP5-201ENST00000441137 268 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 RPS20P10-201ENST00000451209 253 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 AC011604.1-201ENST00000545978 196 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
NIPAL3Q6P499 PRELID3BP2-201ENST00000605362 201 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 AL391903.3-201ENST00000612158 163 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 AC139792.2-201ENST00000624218 587 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 TPTEP1-208ENST00000636884 213 ntBASIC0.83□□□□□ -2.28
NIPAL3Q6P499 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.83□□□□□ -2.28
NIPAL3Q6P499 RNU6-324P-201ENST00000363957 106 ntBASIC0.82□□□□□ -2.28
NIPAL3Q6P499 Y_RNA.279-201ENST00000364763 95 ntBASIC0.82□□□□□ -2.28
NIPAL3Q6P499 RNU6-310P-201ENST00000384655 107 ntBASIC0.82□□□□□ -2.28
NIPAL3Q6P499 SNORA75.2-201ENST00000391138 150 ntBASIC0.82□□□□□ -2.28
NIPAL3Q6P499 SNORA75.3-201ENST00000391231 150 ntBASIC0.82□□□□□ -2.28
NIPAL3Q6P499 RNU6-192P-201ENST00000391253 100 ntBASIC0.82□□□□□ -2.28
NIPAL3Q6P499 RNU6-876P-201ENST00000391295 104 ntBASIC0.82□□□□□ -2.28
NIPAL3Q6P499 MIR1298-201ENST00000408783 112 ntBASIC0.82□□□□□ -2.28
NIPAL3Q6P499 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms