Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Y_RNA.26-201ENST00000362539 101 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.105-201ENST00000363182 111 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 SNORD113-8-201ENST00000363497 74 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.267-201ENST00000364679 109 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.286-201ENST00000364813 102 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AC117470.1-201ENST00000381974 330 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 RNU6-505P-201ENST00000384427 107 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 HSPE1P9-201ENST00000440046 311 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AL606517.2-201ENST00000442855 241 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AC005042.3-201ENST00000453230 174 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AC010655.3-201ENST00000478818 450 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AC098869.1-201ENST00000481627 292 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 MIR5089-201ENST00000580047 84 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 DEFB117-201ENST00000602356 141 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 AC022441.3-201ENST00000605737 136 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 U6.108-201ENST00000637764 58 ntBASIC1.59□□□□□ -2.15
PDLIM3Q53GG5 RNU6-238P-201ENST00000363313 106 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.230-201ENST00000364348 109 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.243-201ENST00000364481 109 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 RNU6-296P-201ENST00000384608 107 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 MIR606-201ENST00000384851 96 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 MIR873-201ENST00000401120 77 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 RNU6-985P-201ENST00000410182 104 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 ELOCP20-201ENST00000422460 345 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AL445685.2-201ENST00000422551 342 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 RPS4XP11-201ENST00000446897 772 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC233266.1-201ENST00000454518 96 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 RNU7-34P-201ENST00000459394 64 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 MRPS35P2-201ENST00000508242 191 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC097462.1-201ENST00000514125 324 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 RNU6-436P-201ENST00000516171 114 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 SNORA25.15-201ENST00000516487 89 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.713-201ENST00000517013 96 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC011604.1-201ENST00000545978 196 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 DNAJC19P9-201ENST00000555084 351 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC110588.1-201ENST00000559699 137 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC006504.6-201ENST00000590142 199 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.812-201ENST00000610788 101 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC242852.1-201ENST00000612151 96 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.784-201ENST00000613803 101 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.787-201ENST00000616522 101 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.780-201ENST00000617336 101 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.801-201ENST00000619005 101 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC244015.1-201ENST00000622301 99 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 AC127459.3-201ENST00000624328 466 ntBASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.58□□□□□ -2.16
PDLIM3Q53GG5 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.19-201ENST00000362462 99 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.64-201ENST00000362845 102 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 RNU1-22P-201ENST00000363334 158 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.153-201ENST00000363615 91 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 RNU6-271P-201ENST00000363858 105 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.512-201ENST00000384518 102 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 RPS26P55-201ENST00000471178 356 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 RNU7-99P-201ENST00000516271 62 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 RNU6-1337P-201ENST00000516525 95 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 RNU7-128P-201ENST00000517247 62 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 RPL21P9-201ENST00000556149 474 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 MIR3683-201ENST00000580847 82 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 MIR4300-201ENST00000581016 96 ntBASIC1.57□□□□□ -2.16
PDLIM3Q53GG5 ICE2P2-201ENST00000483823 2787 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 MIR126-201ENST00000362291 85 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.172-201ENST00000363765 102 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.214-201ENST00000364201 112 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.327-201ENST00000365201 102 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 SNORA63.7-201ENST00000365579 123 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.380-201ENST00000365663 111 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 RNU6-102P-201ENST00000384485 104 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 MIR215-201ENST00000384858 110 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 MIR515-2-201ENST00000384883 83 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 MIR515-1-201ENST00000384884 83 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 RNU2-2P-201ENST00000410396 191 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 RNU6-121P-201ENST00000410525 99 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 RPL21P38-201ENST00000418090 167 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 AC245047.3-201ENST00000429428 127 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 AC091021.1-201ENST00000468051 388 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 RNU6-1291P-201ENST00000516591 104 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 AC008737.2-201ENST00000599446 118 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.56□□□□□ -2.16
PDLIM3Q53GG5 SNORD81.1-201ENST00000363064 77 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.152-201ENST00000363578 100 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.183-201ENST00000363882 113 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 RNU6-770P-201ENST00000363929 105 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 6.4 ms