| NDUFA9 | Q16795 | AC103810.9-201 | ENST00000606688 | 112 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | CDKN3-212 | ENST00000620759 | 196 nt | TSL 5 BASIC | 0.99 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | KLRA1P-203 | ENST00000535939 | 2353 nt | TSL 1 (best) BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | ZGRF1-202 | ENST00000309071 | 3347 nt | TSL 1 (best) BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | MIRLET7C-201 | ENST00000362160 | 84 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | SNORD115-30-201 | ENST00000364117 | 82 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | RNU4-41P-201 | ENST00000364426 | 143 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | RNA5SP511-201 | ENST00000410487 | 115 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AC138393.2-201 | ENST00000414742 | 246 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | MRPL35P3-201 | ENST00000421557 | 364 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | MRPS18CP6-201 | ENST00000423587 | 223 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | Z98949.2-201 | ENST00000440996 | 144 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | Y_RNA.653-201 | ENST00000459091 | 95 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | RNU6-947P-201 | ENST00000516264 | 106 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | SNORA20.3-201 | ENST00000516880 | 132 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | RNA5SP404-201 | ENST00000517118 | 132 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AL358944.1-201 | ENST00000528537 | 144 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | SNORD114-21-201 | ENST00000606412 | 72 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | BX284668.6-201 | ENST00000606899 | 438 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AL355073.2-201 | ENST00000612106 | 557 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | CCDC68-202 | ENST00000432185 | 4014 nt | APPRIS P1 TSL 1 (best) BASIC | 0.98 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | SNORA2.2-201 | ENST00000365473 | 135 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | Y_RNA.361-201 | ENST00000365515 | 120 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AL451046.2-201 | ENST00000403074 | 277 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | Y_RNA.605-201 | ENST00000410577 | 105 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | FCF1P4-201 | ENST00000448326 | 183 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | ELOCP24-201 | ENST00000456370 | 334 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AC048334.1-201 | ENST00000477975 | 159 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | RNU6-322P-201 | ENST00000516010 | 103 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | SNORA31.2-201 | ENST00000516019 | 134 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | RNU6-1116P-201 | ENST00000517269 | 99 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | CR383656.11-201 | ENST00000552261 | 498 nt | TSL 3 BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AC032019.2-201 | ENST00000584916 | 403 nt | TSL 5 BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AL117336.2-201 | ENST00000602435 | 335 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AC027335.2-201 | ENST00000624030 | 375 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | AC099654.14-201 | ENST00000638599 | 341 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| NDUFA9 | Q16795 | C9orf84-204 | ENST00000394777 | 4955 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | Y_RNA.101-201 | ENST00000363154 | 102 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNY3P4-201 | ENST00000384428 | 101 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | MIR222-201 | ENST00000384992 | 110 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | TRAJ3-201 | ENST00000390534 | 62 nt | APPRIS P1 BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AL354751.2-201 | ENST00000415471 | 210 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC069079.1-201 | ENST00000419889 | 400 nt | TSL 3 BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RBMX2P4-201 | ENST00000441256 | 376 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC082651.2-201 | ENST00000496833 | 166 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | PRDX4P1-201 | ENST00000507189 | 574 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-1337P-201 | ENST00000516525 | 95 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | SNORA70.22-201 | ENST00000517160 | 124 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC006380.1-201 | ENST00000603598 | 186 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | EYS-205 | ENST00000393380 | 5450 nt | TSL 1 (best) BASIC | 0.96 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | Y_RNA.314-201 | ENST00000365114 | 102 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | Y_RNA.390-201 | ENST00000383932 | 102 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-1054P-201 | ENST00000411293 | 104 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC104332.1-201 | ENST00000440471 | 797 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RPEP5-201 | ENST00000441137 | 268 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RPS23P4-201 | ENST00000487908 | 423 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | SNORA70.12-201 | ENST00000516084 | 153 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNA5SP102-201 | ENST00000516865 | 106 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC122108.2-201 | ENST00000611946 | 526 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC025253.1-201 | ENST00000613623 | 543 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC240442.1-201 | ENST00000616055 | 283 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | MTND4LP32-201 | ENST00000636111 | 270 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-626P-201 | ENST00000363354 | 107 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | Y_RNA.142-201 | ENST00000363491 | 102 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | Y_RNA.238-201 | ENST00000364441 | 102 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU4-38P-201 | ENST00000364472 | 129 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-1080P-201 | ENST00000383982 | 107 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-20P-201 | ENST00000384106 | 107 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-1297P-201 | ENST00000384415 | 104 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-910P-201 | ENST00000390844 | 107 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | SNORD78.2-201 | ENST00000391076 | 69 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AL031003.1-201 | ENST00000404229 | 172 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU2-54P-201 | ENST00000410299 | 190 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | Y_RNA.621-201 | ENST00000411065 | 96 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | CEP57L1P1-201 | ENST00000430943 | 1201 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AL162725.1-201 | ENST00000435405 | 301 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | HSPE1P13-201 | ENST00000451143 | 297 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | SNORA31.4-201 | ENST00000516049 | 129 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | SNORD116-28-201 | ENST00000516123 | 91 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-1012P-201 | ENST00000516606 | 109 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC005176.2-201 | ENST00000596933 | 147 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC133104.2-201 | ENST00000615272 | 193 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC011476.5-201 | ENST00000615594 | 130 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | MIR8070-201 | ENST00000616510 | 88 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | U2.1-201 | ENST00000618978 | 145 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | MT-ND4-201 | ENST00000361381 | 1378 nt | APPRIS P1 BASIC | 0.94 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6-490P-201 | ENST00000362985 | 107 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | SNORD68-201 | ENST00000363214 | 84 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | Y_RNA.259-201 | ENST00000364619 | 101 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | SNORA25.9-201 | ENST00000365087 | 128 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | Y_RNA.387-201 | ENST00000383918 | 102 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | MIR559-201 | ENST00000385188 | 96 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | MIR891A-201 | ENST00000401237 | 79 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RNU6ATAC8P-201 | ENST00000408460 | 126 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | NCOA7-AS1-201 | ENST00000429007 | 501 nt | TSL 3 BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC096644.2-201 | ENST00000429278 | 159 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AC245047.7-201 | ENST00000440265 | 293 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | RPS4XP11-201 | ENST00000446897 | 772 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | MIR4659A-201 | ENST00000580269 | 81 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| NDUFA9 | Q16795 | AL357312.1-201 | ENST00000603879 | 298 nt | BASIC | 0.93 | □□□□□ -2.26 | | |