Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNU6-925P-201ENST00000384629 104 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 Y_RNA.560-201ENST00000384689 102 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 SNORA75.6-201ENST00000391318 127 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 RNU6-602P-201ENST00000411155 105 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 AC243428.1-201ENST00000421099 264 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 MTCYBP8-201ENST00000422855 651 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC-0.17□□□□□ -2.44
CHD3Q12873 AC073464.1-201ENST00000429823 534 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 MTCO2P11-201ENST00000431069 680 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 MTCO2P16-201ENST00000436962 677 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 RNA5SP20-201ENST00000515976 84 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 MIR4300-201ENST00000581016 96 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 AC018645.2-201ENST00000609151 472 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 AL591926.4-201ENST00000616895 298 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 MIR1295B-201ENST00000636144 60 ntBASIC-0.17□□□□□ -2.44
CHD3Q12873 RNY1P16-201ENST00000363063 111 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 SNORD115-32-201ENST00000364079 82 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 RNA5SP517-201ENST00000364724 117 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 MIR145-201ENST00000384967 88 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 RNU5A-5P-201ENST00000411054 116 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 RPL30P16-201ENST00000419341 429 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 UQCRBP2-201ENST00000447827 297 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 RNU2-56P-201ENST00000516826 190 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 MRPS36P3-201ENST00000519284 130 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.18□□□□□ -2.44
CHD3Q12873 MIR3678-201ENST00000578455 94 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 MIR548AO-201ENST00000579992 96 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 MIR548AX-201ENST00000580117 73 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 AC005828.6-201ENST00000606610 232 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 MIR6740-201ENST00000618268 113 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 AP002371.2-201ENST00000624450 503 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 Y_RNA.184-201ENST00000363884 108 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 RNU6-74P-201ENST00000384235 107 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 SNORA40.4-201ENST00000390971 128 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 AL512326.2-201ENST00000426359 151 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-0.18□□□□□ -2.44
CHD3Q12873 MIR4723-201ENST00000585070 81 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 CLPTM1LP1-201ENST00000604519 484 ntBASIC-0.18□□□□□ -2.44
CHD3Q12873 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.18□□□□□ -2.44
CHD3Q12873 RNU6-454P-201ENST00000364292 107 ntBASIC-0.19□□□□□ -2.44
CHD3Q12873 SNORA8.2-201ENST00000384372 139 ntBASIC-0.19□□□□□ -2.44
CHD3Q12873 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-0.19□□□□□ -2.44
CHD3Q12873 AC133104.1-201ENST00000429100 218 ntBASIC-0.19□□□□□ -2.44
CHD3Q12873 AC005176.2-201ENST00000596933 147 ntBASIC-0.19□□□□□ -2.44
CHD3Q12873 AC008536.2-201ENST00000607284 349 ntBASIC-0.19□□□□□ -2.44
CHD3Q12873 AC079248.2-201ENST00000623779 326 ntBASIC-0.19□□□□□ -2.44
CHD3Q12873 MIR410-201ENST00000362222 80 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 RNU6-442P-201ENST00000383968 104 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 MIR517A-201ENST00000385001 87 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 RNU6-205P-201ENST00000390858 107 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 RNU6-679P-201ENST00000391003 106 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-0.2□□□□□ -2.44
CHD3Q12873 RN7SKP12-201ENST00000516275 143 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC-0.2□□□□□ -2.44
CHD3Q12873 MIR4743-201ENST00000584576 69 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 uc_338.4-201ENST00000616635 176 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 RNU6-1266P-201ENST00000362794 105 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 Y_RNA.378-201ENST00000365652 113 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 RNU6-756P-201ENST00000383997 107 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 RNU6-214P-201ENST00000384130 107 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 MIR635-201ENST00000384830 98 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 RNA5SP496-201ENST00000391240 109 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 MIR892B-201ENST00000401279 77 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 RNU2-59P-201ENST00000410482 191 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.2□□□□□ -2.44
CHD3Q12873 snoU13.2-201ENST00000459201 104 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC-0.2□□□□□ -2.44
CHD3Q12873 MIR6079-201ENST00000635807 62 ntBASIC-0.2□□□□□ -2.44
CHD3Q12873 SNORD114-28-201ENST00000363610 72 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 SNORD14.1-201ENST00000365609 90 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 MIR224-201ENST00000384889 81 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 RNA5SP227-201ENST00000516184 113 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-0.21□□□□□ -2.44
CHD3Q12873 AC015726.2-201ENST00000620112 122 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 FGF7P2-201ENST00000332473 296 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 RNU6-1329P-201ENST00000365664 107 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 MIR15B-201ENST00000385045 98 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 RNU6-131P-201ENST00000391144 107 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 SNORD100-201ENST00000408573 76 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 AL359672.1-201ENST00000442302 409 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 RNU6-782P-201ENST00000516852 104 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 RNA5SP94-201ENST00000516917 108 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 MTND2P38-201ENST00000522536 667 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 MTND1P8-201ENST00000571424 950 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 MIR3612-201ENST00000579753 87 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 AC012433.1-201ENST00000588916 398 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 POLR3GP1-201ENST00000594073 261 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 AC087683.2-201ENST00000611384 326 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 AC098679.4-201ENST00000624241 654 ntBASIC-0.21□□□□□ -2.44
CHD3Q12873 SNORD49B-201ENST00000365172 72 ntBASIC-0.22□□□□□ -2.44
CHD3Q12873 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-0.22□□□□□ -2.44
CHD3Q12873 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-0.22□□□□□ -2.44
CHD3Q12873 USP9YP12-201ENST00000450481 570 ntBASIC-0.22□□□□□ -2.44
CHD3Q12873 RPL17P19-201ENST00000489069 552 ntBASIC-0.22□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms