Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MT-TN-201ENST00000387400 73 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-747P-201ENST00000390928 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-241P-201ENST00000391148 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 MIR873-201ENST00000401120 77 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-447P-201ENST00000410293 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-1118P-201ENST00000410382 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-1076P-201ENST00000410397 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-355P-201ENST00000410427 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-791P-201ENST00000410467 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-705P-201ENST00000410601 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-1100P-201ENST00000410691 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-860P-201ENST00000410860 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-1217P-201ENST00000411276 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-785P-201ENST00000411324 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 MTCO2P8-201ENST00000412213 658 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC-0.25□□□□□ -2.45
FOXA3P55318 MTCO2P27-201ENST00000420740 428 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 AC092447.3-201ENST00000426027 686 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 SNRPGP10-201ENST00000432323 225 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 AL358934.1-201ENST00000432346 324 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU7-187P-201ENST00000458985 68 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-329P-201ENST00000459618 107 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-0.25□□□□□ -2.45
FOXA3P55318 AC046134.1-201ENST00000514454 666 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 SNORA19.2-201ENST00000516013 114 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC-0.25□□□□□ -2.45
FOXA3P55318 U6.90-201ENST00000614007 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 AL158063.1-201ENST00000615349 536 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 U6.70-201ENST00000620287 104 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 Y_RNA.159-201ENST00000363674 87 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 RNU6-756P-201ENST00000383997 107 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 RNU6-187P-201ENST00000384139 106 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 SNORA51.10-201ENST00000384418 136 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 MIR620-201ENST00000385232 95 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-0.26□□□□□ -2.45
FOXA3P55318 ELOCP21-201ENST00000412558 336 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 CYCSP46-201ENST00000423569 204 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 BTF3P11-201ENST00000426582 477 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC-0.26□□□□□ -2.45
FOXA3P55318 SNORD42A-201ENST00000459584 64 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.26□□□□□ -2.45
FOXA3P55318 MTCO2P30-201ENST00000503662 364 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC-0.26□□□□□ -2.45
FOXA3P55318 SNORA25.10-201ENST00000515926 124 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 Y_RNA.670-201ENST00000516255 105 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 RNA5SP268-201ENST00000516828 124 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 AC026371.1-201ENST00000551867 419 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.26□□□□□ -2.45
FOXA3P55318 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC-0.26□□□□□ -2.45
FOXA3P55318 MIR3913-1-201ENST00000577744 102 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 MIR3684-201ENST00000579779 74 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 uc_338.6-201ENST00000613544 171 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 MTND1P7-201ENST00000632801 297 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 MIR499B-201ENST00000636498 73 ntBASIC-0.26□□□□□ -2.45
FOXA3P55318 SNORD113-7-201ENST00000363762 77 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 RNU6-82P-201ENST00000363970 107 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 Y_RNA.201-201ENST00000364052 96 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 Y_RNA.253-201ENST00000364562 112 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 RNA5SP128-201ENST00000365305 116 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 RNU6-1264P-201ENST00000383891 107 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 RNU6-281P-201ENST00000384212 103 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 MIR760-201ENST00000390220 80 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 SNORD37.1-201ENST00000390968 65 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-0.27□□□□□ -2.45
FOXA3P55318 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-0.27□□□□□ -2.45
FOXA3P55318 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.27□□□□□ -2.45
FOXA3P55318 RNU7-62P-201ENST00000458856 62 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 HMGN1P10-201ENST00000474557 553 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 RPL17P19-201ENST00000489069 552 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-0.27□□□□□ -2.45
FOXA3P55318 AC010486.3-201ENST00000511602 785 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 RNU7-156P-201ENST00000517214 74 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-0.27□□□□□ -2.45
FOXA3P55318 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-0.27□□□□□ -2.45
FOXA3P55318 MIR4305-201ENST00000583252 102 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 MIR2909-201ENST00000617113 69 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 AC073534.2-201ENST00000620377 381 ntBASIC-0.27□□□□□ -2.45
FOXA3P55318 AC106754.1-201ENST00000562632 1513 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.28□□□□□ -2.45
FOXA3P55318 RNU6-454P-201ENST00000364292 107 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 RNU4-66P-201ENST00000365199 138 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 RNU6-716P-201ENST00000365621 103 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 MIR489-201ENST00000384923 84 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 MIR125B2-201ENST00000385128 89 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 RNU6-131P-201ENST00000391144 107 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 SNORA26-201ENST00000391286 122 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 MIR548H2-201ENST00000408874 88 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 RNU6-248P-201ENST00000410720 107 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 HMGN2P32-201ENST00000444648 269 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-0.28□□□□□ -2.45
FOXA3P55318 UQCRBP2-201ENST00000447827 297 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 AC005042.3-201ENST00000453230 174 ntBASIC-0.28□□□□□ -2.45
FOXA3P55318 PCMTD1P1-201ENST00000455560 355 ntBASIC-0.28□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms