Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORD83.1-201ENST00000411362 77 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.01□□□□□ -2.41
LIMS3P0CW19 MTND1P24-201ENST00000552175 861 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 ZNF519P2-201ENST00000557032 169 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 AL355375.2-201ENST00000574825 175 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 RAC1P9-201ENST00000604990 392 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 Y_RNA.164-201ENST00000363709 102 ntBASIC-0.02□□□□□ -2.41
LIMS3P0CW19 RNU6-595P-201ENST00000363944 107 ntBASIC-0.02□□□□□ -2.41
LIMS3P0CW19 RNU6-42P-201ENST00000384165 107 ntBASIC-0.02□□□□□ -2.41
LIMS3P0CW19 Y_RNA.533-201ENST00000384596 114 ntBASIC-0.02□□□□□ -2.41
LIMS3P0CW19 RNA5SP475-201ENST00000410568 110 ntBASIC-0.02□□□□□ -2.41
LIMS3P0CW19 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-0.02□□□□□ -2.41
LIMS3P0CW19 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.02□□□□□ -2.41
LIMS3P0CW19 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC-0.02□□□□□ -2.41
LIMS3P0CW19 MIR4273-201ENST00000582824 84 ntBASIC-0.02□□□□□ -2.41
LIMS3P0CW19 AC125232.2-201ENST00000592457 143 ntBASIC-0.02□□□□□ -2.41
LIMS3P0CW19 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC-0.02□□□□□ -2.41
LIMS3P0CW19 MIR377-201ENST00000362145 69 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 RNA5SP517-201ENST00000364724 117 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 Y_RNA.372-201ENST00000365599 102 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 RNU6-1145P-201ENST00000384246 107 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 MIR499A-201ENST00000384903 122 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 RNU6-679P-201ENST00000391003 106 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.03□□□□□ -2.41
LIMS3P0CW19 Y_RNA.695-201ENST00000516715 107 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 LRRC34P1-201ENST00000542742 915 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 AC018448.1-201ENST00000552843 316 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 EIF1P4-201ENST00000572664 335 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 AL357075.2-201ENST00000614906 189 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 MIR3674-201ENST00000636576 68 ntBASIC-0.03□□□□□ -2.41
LIMS3P0CW19 Y_RNA.106-201ENST00000363189 100 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 SNORD114-23-201ENST00000363536 72 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 RNU6-454P-201ENST00000364292 107 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 Y_RNA.243-201ENST00000364481 109 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 Y_RNA.253-201ENST00000364562 112 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 RNU6-934P-201ENST00000365154 107 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 RNU6-596P-201ENST00000365395 98 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 Y_RNA.476-201ENST00000384347 108 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 MT-TN-201ENST00000387400 73 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 MLLT10P1-201ENST00000418346 262 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 EIF1P2-201ENST00000428233 350 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 AC073261.1-201ENST00000429409 121 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 DLGAP5P1-201ENST00000430307 464 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-0.04□□□□□ -2.42
LIMS3P0CW19 AC010486.3-201ENST00000511602 785 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 RNU6-863P-201ENST00000515989 104 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 RNU6-415P-201ENST00000516252 97 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 AC069113.3-201ENST00000521019 150 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 AC022616.4-201ENST00000522985 181 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 AL158211.1-201ENST00000566763 763 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 MIR548AO-201ENST00000579992 96 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 AC073114.1-201ENST00000612027 490 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 AC078938.1-201ENST00000620993 318 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 uc_338.16-201ENST00000621804 95 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 AC068137.3-201ENST00000639191 341 ntBASIC-0.04□□□□□ -2.42
LIMS3P0CW19 Y_RNA.4-201ENST00000362333 112 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 RNU6-1252P-201ENST00000363054 104 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 Y_RNA.135-201ENST00000363439 95 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 RNU6-580P-201ENST00000365159 107 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 Y_RNA.373-201ENST00000365600 103 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 Y_RNA.409-201ENST00000383990 98 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 Y_RNA.582-201ENST00000391023 95 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-0.05□□□□□ -2.42
LIMS3P0CW19 AC092447.3-201ENST00000426027 686 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 AC116353.2-201ENST00000505332 712 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 Y_RNA.665-201ENST00000516177 98 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.05□□□□□ -2.42
LIMS3P0CW19 MIR548AR-201ENST00000582191 57 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 AC027514.1-201ENST00000588561 1603 ntBASIC-0.05□□□□□ -2.42
LIMS3P0CW19 SNORD114-16-201ENST00000363044 70 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.06□□□□□ -2.42
LIMS3P0CW19 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-0.06□□□□□ -2.42
LIMS3P0CW19 RNU6-956P-201ENST00000458868 103 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 U8.19-201ENST00000459095 133 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 U8.22-201ENST00000459141 133 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 RNU6-625P-201ENST00000459412 107 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.06□□□□□ -2.42
LIMS3P0CW19 RNU6-1337P-201ENST00000516525 95 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 SNORA62.5-201ENST00000516634 120 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 Y_RNA.714-201ENST00000517065 90 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC-0.06□□□□□ -2.42
LIMS3P0CW19 MIR4804-201ENST00000581683 73 ntBASIC-0.06□□□□□ -2.42
LIMS3P0CW19 SNORA42.1-201ENST00000363515 137 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 RNU6-1085P-201ENST00000363576 107 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 RNU6-815P-201ENST00000384080 113 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 Y_RNA.530-201ENST00000384587 101 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 RNU6-131P-201ENST00000391144 107 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 RNU2-54P-201ENST00000410299 190 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.07□□□□□ -2.42
LIMS3P0CW19 AL139396.1-201ENST00000421137 167 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 RNU6-256P-201ENST00000516747 97 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-0.07□□□□□ -2.42
LIMS3P0CW19 MIR4514-201ENST00000581410 57 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 AC024933.1-201ENST00000608472 348 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 MIR6718-201ENST00000616153 80 ntBASIC-0.07□□□□□ -2.42
LIMS3P0CW19 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 SNORD118-201ENST00000363593 134 ntBASIC-0.08□□□□□ -2.42
LIMS3P0CW19 RNU4-67P-201ENST00000364569 141 ntBASIC-0.08□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 203.7 ms