Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MIR8062-201ENST00000621515 85 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
HOXD4P09016 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.55□□□□□ -2.16
HOXD4P09016 Y_RNA.84-201ENST00000363011 104 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 Y_RNA.124-201ENST00000363339 93 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 Y_RNA.361-201ENST00000365515 120 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 Y_RNA.376-201ENST00000365638 108 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 RNU6-472P-201ENST00000384299 107 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 AL031003.1-201ENST00000404229 172 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 AC009310.1-201ENST00000414414 451 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 ATP5J2P3-201ENST00000451550 258 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 AC010598.1-201ENST00000510378 103 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.54□□□□□ -2.16
HOXD4P09016 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.54□□□□□ -2.16
HOXD4P09016 AC006380.1-201ENST00000603598 186 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 AC127459.3-201ENST00000624328 466 ntBASIC1.54□□□□□ -2.16
HOXD4P09016 Y_RNA.16-201ENST00000362421 102 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 RNU4-90P-201ENST00000362773 141 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 snoU2-30.2-201ENST00000362805 70 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 SNORA33-201ENST00000363664 130 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 Y_RNA.287-201ENST00000364853 94 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 Y_RNA.396-201ENST00000383949 103 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 Y_RNA.461-201ENST00000384263 103 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 RNU6-574P-201ENST00000384265 107 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 Y_RNA.483-201ENST00000384380 101 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 RNU6-417P-201ENST00000384712 107 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MIR499A-201ENST00000384903 122 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MT-TW-201ENST00000387382 68 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
HOXD4P09016 AL117342.1-201ENST00000404861 406 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MIR1253-201ENST00000408273 105 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 RNU6-1203P-201ENST00000410703 110 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 RNA5SP501-201ENST00000410990 112 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 AC099677.2-201ENST00000436385 175 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXD4P09016 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.53□□□□□ -2.16
HOXD4P09016 RNU6-436P-201ENST00000516171 114 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 SUMO2P18-201ENST00000518873 252 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
HOXD4P09016 AL161670.1-201ENST00000554348 137 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 DNAJC19P9-201ENST00000555084 351 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MIR4419B-201ENST00000577260 68 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MIR3145-201ENST00000580727 82 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MIR4303-201ENST00000581299 66 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXD4P09016 AL353149.1-201ENST00000610667 244 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MIR8070-201ENST00000616510 88 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 MIR7111-201ENST00000619751 72 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.53□□□□□ -2.16
HOXD4P09016 MIR338-201ENST00000636369 67 ntBASIC1.53□□□□□ -2.16
HOXD4P09016 SNORA27.1-201ENST00000362604 124 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 RNU6-862P-201ENST00000362804 105 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 Y_RNA.144-201ENST00000363521 113 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 RNU6-324P-201ENST00000363957 106 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 Y_RNA.329-201ENST00000365209 107 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 RNU6-290P-201ENST00000365212 101 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 Y_RNA.383-201ENST00000383855 97 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 RNU6-196P-201ENST00000384315 107 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 SNORA48.1-201ENST00000390879 135 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 POLR2KP2-201ENST00000438155 177 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 MRPS10P1-201ENST00000448483 130 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 TRBVB-201ENST00000477100 408 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.52□□□□□ -2.17
HOXD4P09016 AC023157.2-201ENST00000540596 141 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.52□□□□□ -2.17
HOXD4P09016 MIR3684-201ENST00000579779 74 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 DEFB117-201ENST00000602356 141 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 AL512598.1-201ENST00000610158 273 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.52□□□□□ -2.17
HOXD4P09016 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HOXD4P09016 RNU6-407P-201ENST00000365280 104 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 Y_RNA.418-201ENST00000384029 102 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 MIR873-201ENST00000401120 77 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.51□□□□□ -2.17
HOXD4P09016 SUMO1P2-201ENST00000452524 304 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 RPS27P22-201ENST00000478056 241 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.51□□□□□ -2.17
HOXD4P09016 RNU6-1146P-201ENST00000516282 102 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.51□□□□□ -2.17
HOXD4P09016 MIR4503-201ENST00000582187 83 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 AC005786.1-201ENST00000588553 154 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 AP001282.2-201ENST00000616149 309 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 7SK.10-201ENST00000621414 298 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 AC006435.5-201ENST00000624486 112 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 AC010615.1-201ENST00000594254 1764 ntBASIC1.51□□□□□ -2.17
HOXD4P09016 SNORA25.9-201ENST00000365087 128 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 RNU6-463P-201ENST00000384340 107 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 RNU6-505P-201ENST00000384427 107 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 Y_RNA.569-201ENST00000384749 103 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 RNA5SP467-201ENST00000391274 118 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 MIR1302-3-201ENST00000408128 138 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 MIR1302-6-201ENST00000408466 90 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 RNU2-61P-201ENST00000411069 191 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.5□□□□□ -2.17
HOXD4P09016 RPS26P55-201ENST00000471178 356 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 RNA5SP20-201ENST00000515976 84 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 RNU6-970P-201ENST00000516312 107 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 RNVU1-2-201ENST00000516326 135 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms