Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC245047.7-201ENST00000440265 293 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AC107399.1-201ENST00000451226 265 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AL049830.1-201ENST00000468034 425 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 HMGN1P7-201ENST00000491722 313 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AC022493.2-201ENST00000506122 481 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AC074133.1-201ENST00000515696 183 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.655-201ENST00000515919 96 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-351P-201ENST00000516097 100 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AP002004.2-201ENST00000531656 154 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 MIR4661-201ENST00000582720 75 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 FAM71BP1-201ENST00000604431 523 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AC092794.2-201ENST00000620933 563 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.6-201ENST00000362350 114 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-117P-201ENST00000365415 107 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 SNORA75.4-201ENST00000391278 119 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 SNORD12B-201ENST00000410433 91 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 RNA5SP511-201ENST00000410487 115 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 RNU4-14P-201ENST00000410858 122 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-1304P-201ENST00000411374 106 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 RPEP5-201ENST00000441137 268 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 UBE2V1P7-201ENST00000446395 340 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 RPS4XP11-201ENST00000446897 772 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 MTND4P17-201ENST00000470444 350 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 AC005840.1-201ENST00000498412 377 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 SNORA31.4-201ENST00000516049 129 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 RNU7-30P-201ENST00000516835 62 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-1096P-201ENST00000517089 102 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 FAM106DP-201ENST00000586416 501 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 AC011712.1-201ENST00000588959 234 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 AC211469.2-201ENST00000605461 205 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 PISRT1.1-201ENST00000616930 107 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 MIR6866-201ENST00000638146 69 ntBASIC0.71□□□□□ -2.3
EXOSC4Q9NPD3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-593P-201ENST00000364716 112 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 Y_RNA.338-201ENST00000365320 114 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 SNORA2.2-201ENST00000365473 135 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 Y_RNA.482-201ENST00000384377 111 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 MIR526A1-201ENST00000384897 85 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNA5SP482-201ENST00000391269 118 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 MIR873-201ENST00000401120 77 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-321P-201ENST00000410912 106 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNU5A-5P-201ENST00000411054 116 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 PIGPP3-201ENST00000425307 415 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RPL17P19-201ENST00000489069 552 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RPS26P48-201ENST00000491713 339 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-408P-201ENST00000515910 100 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 SNORD79.1-201ENST00000516069 84 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-1278P-201ENST00000516130 107 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-197P-201ENST00000516680 100 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 RNU7-28P-201ENST00000516759 62 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 AC055872.1-201ENST00000570978 278 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 MIR4698-201ENST00000577795 80 ntBASIC0.7□□□□□ -2.3
EXOSC4Q9NPD3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AC027514.1-201ENST00000588561 1603 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 MIR410-201ENST00000362222 80 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-1301P-201ENST00000362724 104 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 SNORD114-27-201ENST00000363766 70 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-961P-201ENST00000363893 105 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-926P-201ENST00000384075 107 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AC063976.4-201ENST00000421971 163 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 snoU13.25-201ENST00000458945 104 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 MIR2053-201ENST00000459295 91 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 PSMC1P5-201ENST00000512850 177 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-322P-201ENST00000516010 103 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-358P-201ENST00000516564 75 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-113P-201ENST00000516653 101 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AC023442.1-201ENST00000531247 422 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 MIR3684-201ENST00000579779 74 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AC005828.6-201ENST00000606610 232 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AL096861.1-201ENST00000610899 123 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AC004467.1-201ENST00000615678 330 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 AC008163.1-202ENST00000636004 2889 ntBASIC0.69□□□□□ -2.3
EXOSC4Q9NPD3 SNORD68-201ENST00000363214 84 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 RNY1P10-201ENST00000363268 113 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 Y_RNA.243-201ENST00000364481 109 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 RNU11-5P-201ENST00000391216 129 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 Y_RNA.621-201ENST00000411065 96 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 MTND1P4-201ENST00000435196 415 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms