Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.28□□□□□ -2.2
SSX3Q99909 AC138305.3-201ENST00000624988 240 ntBASIC1.28□□□□□ -2.2
SSX3Q99909 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
SSX3Q99909 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
SSX3Q99909 MIR378A-201ENST00000362177 66 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 RNA5SP327-201ENST00000362494 101 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 SNORD114-7-201ENST00000362520 77 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.27□□□□□ -2.21
SSX3Q99909 AC093027.1-201ENST00000546698 429 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 AC055872.1-201ENST00000570978 278 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 MIR4659A-201ENST00000580269 81 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 MIR4303-201ENST00000581299 66 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 AC091178.2-201ENST00000584401 117 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 VN1R91P-201ENST00000594377 169 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 AC005176.2-201ENST00000596933 147 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 BX248123.2-201ENST00000606318 124 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 AC011476.5-201ENST00000615594 130 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 SNORD3E-202ENST00000627253 216 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 AC112487.2-201ENST00000637950 304 ntBASIC1.27□□□□□ -2.21
SSX3Q99909 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
SSX3Q99909 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
SSX3Q99909 Y_RNA.27-201ENST00000362540 103 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 RNU1-42P-201ENST00000364033 160 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 SNORD115-30-201ENST00000364117 82 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 SNORA25.8-201ENST00000364831 128 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 RNU6-136P-201ENST00000384663 107 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 MIR517C-201ENST00000385103 95 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 SNORA12.1-201ENST00000390873 148 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 SNORA67.6-201ENST00000391093 99 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 RNU4-62P-201ENST00000410125 130 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.26□□□□□ -2.21
SSX3Q99909 AL117351.2-201ENST00000513571 157 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 SNORA70.12-201ENST00000516084 153 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 RNU6-1291P-201ENST00000516591 104 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 AP002004.2-201ENST00000531656 154 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 AL512310.8-201ENST00000550183 120 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 Y_RNA.804-201ENST00000615262 101 ntBASIC1.26□□□□□ -2.21
SSX3Q99909 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.26□□□□□ -2.21
SSX3Q99909 Y_RNA.58-201ENST00000362807 102 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 Y_RNA.101-201ENST00000363154 102 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU6-626P-201ENST00000363354 107 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 Y_RNA.154-201ENST00000363624 102 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU6-60P-201ENST00000364792 103 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNY3P1-201ENST00000365085 102 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU6-117P-201ENST00000365415 107 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNY3-201ENST00000365484 102 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU6-20P-201ENST00000384106 107 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU6-708P-201ENST00000384217 107 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 MIR520G-201ENST00000385064 90 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 MIR660-201ENST00000385235 97 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU2-54P-201ENST00000410299 190 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 CHEK2P4-201ENST00000450340 246 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 Y_RNA.661-201ENST00000516003 99 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU6-63P-201ENST00000516690 95 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU7-28P-201ENST00000516759 62 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 AL512598.1-201ENST00000610158 273 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 AC240442.1-201ENST00000616055 283 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 U6.92-201ENST00000636464 89 ntBASIC1.25□□□□□ -2.21
SSX3Q99909 RNU6-1115P-201ENST00000362490 106 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 SNORA1B-201ENST00000362535 133 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 Y_RNA.338-201ENST00000365320 114 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 RNU6-505P-201ENST00000384427 107 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 AL031003.1-201ENST00000404229 172 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 BTF3P4-201ENST00000418852 495 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.24□□□□□ -2.21
SSX3Q99909 AC233266.1-201ENST00000454518 96 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 AL133373.1-201ENST00000497098 94 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 MTND3P22-201ENST00000510932 243 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 RN7SKP88-201ENST00000516847 250 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 RNU6-1096P-201ENST00000517089 102 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.24□□□□□ -2.21
SSX3Q99909 AC015720.1-201ENST00000565251 277 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 AL645939.4-201ENST00000604495 135 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 7SK.8-201ENST00000612110 250 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 AC242852.1-201ENST00000612151 96 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 7SK.11-201ENST00000615477 250 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 MIR8065-201ENST00000620577 100 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 7SK.13-201ENST00000622040 250 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 AC244015.1-201ENST00000622301 99 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 MIR4272-201ENST00000635924 64 ntBASIC1.24□□□□□ -2.21
SSX3Q99909 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
SSX3Q99909 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SSX3Q99909 Y_RNA.39-201ENST00000362620 98 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 RNU6-324P-201ENST00000363957 106 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 RNU4-76P-201ENST00000364509 141 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 Y_RNA.361-201ENST00000365515 120 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 AC108729.3-201ENST00000513484 108 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 RNU6-155P-201ENST00000516347 100 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 RNU6-1337P-201ENST00000516525 95 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 RNA5SP168-201ENST00000516642 112 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.23□□□□□ -2.21
SSX3Q99909 RAB11AP2-201ENST00000545905 639 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 AL161670.1-201ENST00000554348 137 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 MIR4778-201ENST00000577635 80 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 AC092447.9-201ENST00000603395 144 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 AL138825.1-201ENST00000618587 192 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 AC106754.2-201ENST00000623006 233 ntBASIC1.23□□□□□ -2.21
SSX3Q99909 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.22□□□□□ -2.21
SSX3Q99909 RNU4-73P-201ENST00000363164 141 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 Y_RNA.230-201ENST00000364348 109 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms