Protein–RNA interactions for Protein: Q96KN3

PKNOX2, Homeobox protein PKNOX2, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2Q96KN3 RPS29P25-201ENST00000481709 171 ntBASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 RNU4-54P-201ENST00000516428 129 ntBASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 AC105029.1-201ENST00000520250 669 ntBASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 AC018462.2-201ENST00000605375 395 ntBASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 AC009229.3-201ENST00000608056 282 ntBASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 AC108706.1-201ENST00000611053 297 ntBASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 MIR8070-201ENST00000616510 88 ntBASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.71□□□□□ -2.3
PKNOX2Q96KN3 RNA5SP361-201ENST00000362686 118 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 RNU6-833P-201ENST00000363486 107 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 RNU4-41P-201ENST00000364426 143 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.295-201ENST00000364918 102 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 SUMO1P2-201ENST00000452524 304 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AC117454.1-201ENST00000491120 168 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 MTND5P5-201ENST00000503764 376 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AC026782.1-201ENST00000512952 449 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AC018659.1-201ENST00000551083 169 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 AL096861.1-201ENST00000610899 123 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.7□□□□□ -2.3
PKNOX2Q96KN3 RNU6-874P-201ENST00000362390 105 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 SNORD114-7-201ENST00000362520 77 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 RNU6-454P-201ENST00000364292 107 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 RNU6-879P-201ENST00000364328 108 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 MIR526A1-201ENST00000384897 85 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 SNORA75.2-201ENST00000391138 150 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 SNORA75.3-201ENST00000391231 150 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 MIR891A-201ENST00000401237 79 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 RPS26P5-201ENST00000418544 335 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 MTCYBP10-201ENST00000424905 650 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 AC233266.1-201ENST00000454518 96 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 AC245047.8-201ENST00000456455 284 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 RNU7-90P-201ENST00000459216 62 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 RNU7-87P-201ENST00000459343 62 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 RNU4-49P-201ENST00000516080 140 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 RNU6-1096P-201ENST00000517089 102 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 RNU6-1116P-201ENST00000517269 99 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 FAM106DP-201ENST00000586416 501 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 AC242852.1-201ENST00000612151 96 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 AL391903.3-201ENST00000612158 163 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 AC093913.1-201ENST00000614178 329 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 AC244015.1-201ENST00000622301 99 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 MIR3674-201ENST00000636576 68 ntBASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.224-201ENST00000364308 111 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 RNU4-12P-201ENST00000365233 139 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 SNORD116-13-201ENST00000384408 92 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 MIR92A1-201ENST00000385233 78 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 MIR942-201ENST00000401111 86 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 RNA5SP475-201ENST00000410568 110 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 AC074085.1-201ENST00000413598 418 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 snoU13.25-201ENST00000458945 104 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 RNU6-625P-201ENST00000459412 107 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 AC093534.1-201ENST00000504977 132 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 SNORA70.12-201ENST00000516084 153 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 SNORD111.1-201ENST00000516421 86 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.682-201ENST00000516457 100 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 RNU6-1016P-201ENST00000516689 94 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 RNA5SP102-201ENST00000516865 106 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 EIF1P4-201ENST00000572664 335 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 AC027279.3-201ENST00000625055 122 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 CASC19-280ENST00000642102 1351 ntBASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
PKNOX2Q96KN3 RNY1P16-201ENST00000363063 111 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.243-201ENST00000364481 109 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 RNU6-593P-201ENST00000364716 112 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.594-201ENST00000410373 140 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 AL157398.1-201ENST00000452981 186 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 U8.22-201ENST00000459141 133 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 CYCTP-201ENST00000504253 315 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 AC022868.1-201ENST00000517767 391 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 DEFB108E-201ENST00000524692 240 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 AC120024.3-201ENST00000603167 156 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 AL590095.2-201ENST00000604136 117 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 AC012557.2-201ENST00000605919 418 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 U4.5-201ENST00000617137 123 ntBASIC0.67□□□□□ -2.3
PKNOX2Q96KN3 MIR373-201ENST00000362273 69 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.2-201ENST00000362330 96 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.191-201ENST00000363972 113 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.336-201ENST00000365307 109 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.436-201ENST00000384097 102 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 RNU6-318P-201ENST00000384283 103 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 Y_RNA.473-201ENST00000384333 102 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 MIR499A-201ENST00000384903 122 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 RNU6-1050P-201ENST00000410388 107 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 RNA5SP247-201ENST00000411181 105 ntBASIC0.66□□□□□ -2.3
PKNOX2Q96KN3 RNU6-329P-201ENST00000459618 107 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 160.7 ms