Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 MIR340-201ENST00000362125 95 ntBASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 TRMT112P2-201ENST00000512910 132 ntBASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 RNA5SP20-201ENST00000515976 84 ntBASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 MIR5194-201ENST00000582634 120 ntBASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 MIR4658-201ENST00000584344 65 ntBASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 AL359821.1-201ENST00000605519 182 ntBASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.73□□□□□ -1.97
SMC1BQ8NDV3 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.82-201ENST00000363000 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.92-201ENST00000363043 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.117-201ENST00000363294 101 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.217-201ENST00000364214 105 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.235-201ENST00000364412 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.306-201ENST00000365015 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.312-201ENST00000365089 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.322-201ENST00000365151 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.341-201ENST00000365341 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.456-201ENST00000384232 111 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 RNU1-148P-201ENST00000384472 162 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 MIR29C-201ENST00000385231 88 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 SNORA17.3-201ENST00000391159 129 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 HMGN2P34-201ENST00000437647 269 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 HSPE1P13-201ENST00000451143 297 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.650-201ENST00000459002 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.641-201ENST00000459414 105 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 RPS26P55-201ENST00000471178 356 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 RPS27P22-201ENST00000478056 241 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.777-201ENST00000516982 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 AL137100.2-201ENST00000555786 315 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.771-201ENST00000598668 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.789-201ENST00000622480 102 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 CENPCP1-201ENST00000533085 2578 ntBASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
SMC1BQ8NDV3 Y_RNA.124-201ENST00000363339 93 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 RNY1-201ENST00000364228 113 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 Y_RNA.368-201ENST00000365547 113 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 MIR583-201ENST00000384846 75 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 RNA5SP181-201ENST00000410246 98 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 AL353689.1-201ENST00000438895 199 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 AC011406.1-201ENST00000512440 370 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 SNORA31.11-201ENST00000516528 139 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 SUMO2P18-201ENST00000518873 252 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 AC136628.3-201ENST00000521868 290 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 MIR4643-201ENST00000577473 78 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 MIR5092-201ENST00000583139 88 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 AC009779.6-201ENST00000603972 165 ntBASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.71□□□□□ -1.98
SMC1BQ8NDV3 RNU6-1272P-201ENST00000362776 107 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 SNORD115-3-201ENST00000363100 82 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 RNA5SP210-201ENST00000391034 120 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 AL023284.1-201ENST00000403956 276 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 AC060773.1-201ENST00000421698 310 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 AL031274.2-201ENST00000599419 203 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.15-201ENST00000611544 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.16-201ENST00000613119 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.12-201ENST00000613778 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.20-201ENST00000613956 192 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.9-201ENST00000615427 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.11-201ENST00000616345 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.2-201ENST00000616535 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.3-201ENST00000617785 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.19-201ENST00000618602 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 RNU2-1-201ENST00000618664 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.6-201ENST00000619225 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.5-201ENST00000619465 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 U2.10-201ENST00000620268 191 ntBASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
SMC1BQ8NDV3 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 RNU6-23P-201ENST00000363283 107 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 SNORD114-6-201ENST00000364393 72 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 BTF3P11-201ENST00000426582 477 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 AC010409.1-201ENST00000487382 476 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 RNA5SP137-201ENST00000516833 135 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 RNA5SP402-201ENST00000517148 110 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 MIR4438-201ENST00000585271 93 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 AL442067.1-201ENST00000613261 223 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 AL078604.3-201ENST00000615580 211 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 AC073349.3-201ENST00000617616 186 ntBASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.69□□□□□ -1.98
SMC1BQ8NDV3 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
SMC1BQ8NDV3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.68□□□□□ -1.98
SMC1BQ8NDV3 snoU2-30.2-201ENST00000362805 70 ntBASIC2.68□□□□□ -1.98
SMC1BQ8NDV3 Y_RNA.76-201ENST00000362931 109 ntBASIC2.68□□□□□ -1.98
SMC1BQ8NDV3 Y_RNA.200-201ENST00000364018 102 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms