Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORD79.1-201ENST00000516069 84 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 AC091178.2-201ENST00000584401 117 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 MIR373-201ENST00000362273 69 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.2-201ENST00000362330 96 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.453-201ENST00000384223 109 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 MIR532-201ENST00000385025 91 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 MIR520G-201ENST00000385064 90 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 ELOCP21-201ENST00000412558 336 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 AC002429.1-201ENST00000437672 148 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 LINC01399-202ENST00000458450 244 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 SNORD124-201ENST00000459577 104 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 AL049830.1-201ENST00000468034 425 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 PDCD5P2-201ENST00000507570 312 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 RNU4-49P-201ENST00000516080 140 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.682-201ENST00000516457 100 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.97□□□□□ -2.25
HDDC3Q8N4P3 RNA5SP361-201ENST00000362686 118 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 Y_RNA.124-201ENST00000363339 93 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 MTCYBP10-201ENST00000424905 650 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 AL137792.2-201ENST00000443484 235 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 PCNPP5-201ENST00000452246 481 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 RNU6-625P-201ENST00000459412 107 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 AC018448.1-201ENST00000552843 316 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 MIR5701-3-201ENST00000578890 82 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 MIR5701-1-201ENST00000585138 82 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 AC018462.2-201ENST00000605375 395 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 AL357075.2-201ENST00000614906 189 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 MIR5701-2-201ENST00000615634 82 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 AC127459.3-201ENST00000624328 466 ntBASIC0.96□□□□□ -2.26
HDDC3Q8N4P3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 Y_RNA.301-201ENST00000364990 103 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 Y_RNA.374-201ENST00000365606 101 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 RNU6-1145P-201ENST00000384246 107 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 MIR200A-201ENST00000384875 90 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 MIR873-201ENST00000401120 77 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 RNA5SP475-201ENST00000410568 110 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 AC074085.1-201ENST00000413598 418 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 AC016907.1-201ENST00000419483 435 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 MTND5P5-201ENST00000503764 376 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 RNU6-1016P-201ENST00000516689 94 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 AC022868.1-201ENST00000517767 391 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 AP002001.1-203ENST00000534002 267 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 AL117336.2-201ENST00000602435 335 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 AC103810.9-201ENST00000606688 112 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 U4.5-201ENST00000617137 123 ntBASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
HDDC3Q8N4P3 AC008163.1-202ENST00000636004 2889 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 RNY1P16-201ENST00000363063 111 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 RNU6-623P-201ENST00000363143 105 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 RNU4-41P-201ENST00000364426 143 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 Y_RNA.473-201ENST00000384333 102 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 MIR625-201ENST00000385047 85 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 MIR942-201ENST00000401111 86 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 AL353997.1-201ENST00000432936 108 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 SUMO1P2-201ENST00000452524 304 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 ACA64.5-201ENST00000516207 127 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 SNORD111.1-201ENST00000516421 86 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 RNU6-1096P-201ENST00000517089 102 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 MIR3973-201ENST00000579824 107 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 AC005014.2-201ENST00000607795 599 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 U6.115-201ENST00000636045 103 ntBASIC0.94□□□□□ -2.26
HDDC3Q8N4P3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 Y_RNA.363-201ENST00000365529 113 ntBASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 Y_RNA.557-201ENST00000384680 107 ntBASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 MIR891A-201ENST00000401237 79 ntBASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 MTATP6P26-201ENST00000445926 662 ntBASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 AC090142.3-201ENST00000519012 385 ntBASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 MIR3674-201ENST00000636576 68 ntBASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
HDDC3Q8N4P3 RNU6-593P-201ENST00000364716 112 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 RNU1-36P-201ENST00000365130 165 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 RNU6-136P-201ENST00000384663 107 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 MIR193B-201ENST00000384907 83 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 Y_RNA.594-201ENST00000410373 140 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 AC092423.1-201ENST00000430165 186 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 AC026782.1-201ENST00000512952 449 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 AC105029.1-201ENST00000520250 669 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 AL358944.1-201ENST00000528537 144 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 EIF1P4-201ENST00000572664 335 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 MIR4698-201ENST00000577795 80 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 AC080013.6-201ENST00000606185 215 ntBASIC0.92□□□□□ -2.26
HDDC3Q8N4P3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
HDDC3Q8N4P3 MIRLET7C-201ENST00000362160 84 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms