Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.09□□□□□ -2.23
SKA3Q8IX90 Y_RNA.632-201ENST00000459189 102 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 RNU6-875P-201ENST00000516488 106 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 RNU6-1291P-201ENST00000516591 104 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 RNU6-699P-201ENST00000517081 110 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 RNU2-12P-201ENST00000517216 168 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 AC055872.1-201ENST00000570978 278 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 AC091178.2-201ENST00000584401 117 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 AL157834.3-201ENST00000615543 103 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 AC073349.3-201ENST00000617616 186 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 U2.1-201ENST00000618978 145 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 AL513423.1-201ENST00000621695 132 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 SNORD3E-202ENST00000627253 216 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.09□□□□□ -2.24
SKA3Q8IX90 SNORA1B-201ENST00000362535 133 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 SNORD115-30-201ENST00000364117 82 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 Y_RNA.265-201ENST00000364677 108 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 RNU6-505P-201ENST00000384427 107 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 RNU6-1009P-201ENST00000390996 107 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 AC096644.2-201ENST00000429278 159 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 AC092991.1-201ENST00000477176 376 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 RNU6-507P-201ENST00000516045 100 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 RNU6-341P-201ENST00000516973 96 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 AC093027.1-201ENST00000546698 429 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 AL512310.8-201ENST00000550183 120 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 AC019288.1-201ENST00000557918 224 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.08□□□□□ -2.24
SKA3Q8IX90 MIR4778-201ENST00000577635 80 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 MIR548S-201ENST00000581352 82 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 AL162424.1-201ENST00000602325 221 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 SNORA28-201ENST00000606769 126 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 AC084781.2-201ENST00000615568 161 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 U6.92-201ENST00000636464 89 ntBASIC1.08□□□□□ -2.24
SKA3Q8IX90 RNA5SP432-201ENST00000362480 116 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 Y_RNA.243-201ENST00000364481 109 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 RNU6-117P-201ENST00000365415 107 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 Y_RNA.529-201ENST00000384586 119 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 MIR562-201ENST00000384894 95 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 MIR660-201ENST00000385235 97 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.07□□□□□ -2.24
SKA3Q8IX90 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.07□□□□□ -2.24
SKA3Q8IX90 MTCO2P27-201ENST00000420740 428 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 MRPL35P3-201ENST00000421557 364 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.07□□□□□ -2.24
SKA3Q8IX90 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.07□□□□□ -2.24
SKA3Q8IX90 RNU7-152P-201ENST00000458982 64 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 SNORD19B-201ENST00000459623 84 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 RNU6-63P-201ENST00000516690 95 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 Y_RNA.702-201ENST00000516843 96 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.07□□□□□ -2.24
SKA3Q8IX90 AC006600.1-201ENST00000572529 153 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AL050343.2-201ENST00000607338 280 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AC011476.5-201ENST00000615594 130 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AC004467.1-201ENST00000615678 330 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AC106754.2-201ENST00000623006 233 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AC127459.3-201ENST00000624328 466 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 AC138305.3-201ENST00000624988 240 ntBASIC1.07□□□□□ -2.24
SKA3Q8IX90 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
SKA3Q8IX90 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
SKA3Q8IX90 AL391987.6-201ENST00000305671 199 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 RNU6-1115P-201ENST00000362490 106 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 Y_RNA.263-201ENST00000364659 114 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 Y_RNA.356-201ENST00000365475 113 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 Y_RNA.361-201ENST00000365515 120 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 RNU6-424P-201ENST00000384367 105 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 MIR1285-1-201ENST00000408593 84 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 CALM2P4-201ENST00000430810 426 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 MTND5P20-201ENST00000448677 143 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 CHEK2P4-201ENST00000450340 246 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 FGF7P4-201ENST00000509595 295 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 RNU6-1012P-201ENST00000516606 109 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 RNU6-1096P-201ENST00000517089 102 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.06□□□□□ -2.24
SKA3Q8IX90 AC090821.2-201ENST00000523552 176 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 AP002004.2-201ENST00000531656 154 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 CYP3A52P-201ENST00000563326 91 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 AC005176.2-201ENST00000596933 147 ntBASIC1.06□□□□□ -2.24
SKA3Q8IX90 AC005592.1-201ENST00000566527 1640 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 Y_RNA.27-201ENST00000362540 103 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 Y_RNA.428-201ENST00000384078 102 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 RNU6-708P-201ENST00000384217 107 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 Y_RNA.463-201ENST00000384271 102 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 MIR520G-201ENST00000385064 90 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 AL031003.1-201ENST00000404229 172 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.05□□□□□ -2.24
SKA3Q8IX90 AL603825.1-201ENST00000438481 80 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 RPL39P38-201ENST00000467018 153 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 OR2A41P-201ENST00000473586 105 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 RPL30P7-201ENST00000479312 323 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 OR9P1P-201ENST00000496431 281 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 RNU6-911P-201ENST00000516523 104 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.05□□□□□ -2.24
SKA3Q8IX90 AC006380.1-201ENST00000603598 186 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 snoU13.31-201ENST00000607291 104 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 AC240442.1-201ENST00000616055 283 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 AC112487.2-201ENST00000637950 304 ntBASIC1.05□□□□□ -2.24
SKA3Q8IX90 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
SKA3Q8IX90 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 186.8 ms