Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MTND1P12-201ENST00000455231 147 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AC087894.1-201ENST00000538359 518 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AC133485.4-201ENST00000561835 220 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 UBL5P4-201ENST00000562584 236 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 PCMTD1P2-201ENST00000565017 355 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AC131235.4-201ENST00000609288 620 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 U6.73-201ENST00000619194 103 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 RNU6-24P-201ENST00000384440 107 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 MIR125B2-201ENST00000385128 89 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 MIR136-201ENST00000385207 82 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 AL358934.1-201ENST00000432346 324 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 AL158053.1-201ENST00000441503 453 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 LRRC34P1-201ENST00000542742 915 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 AC104072.1-201ENST00000568817 668 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 MIR4432-201ENST00000581823 84 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 AL162726.3-218ENST00000636401 95 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.6-201ENST00000362350 114 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 RNU6-462P-201ENST00000362659 105 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 AC117470.1-201ENST00000381974 330 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 RNU6-769P-201ENST00000384407 104 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 RNU6-440P-201ENST00000390882 105 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 SNORA25.14-201ENST00000516481 132 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 RNU6-1121P-201ENST00000516802 109 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 RNU6-897P-201ENST00000517135 105 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 MIR4436A-201ENST00000585278 85 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 BNIP3P39-201ENST00000601077 554 ntBASIC-0.36□□□□□ -2.47
CHD9Q3L8U1 RNU6-371P-201ENST00000364283 108 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 RNU6-336P-201ENST00000364891 107 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 SNORA67.2-201ENST00000384300 149 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AC114491.1-201ENST00000416095 246 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 MRPS10P2-201ENST00000431226 381 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 USP9YP29-201ENST00000445112 563 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AC079140.5-201ENST00000507882 310 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AC069113.1-201ENST00000517763 267 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AC010376.1-201ENST00000522101 334 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 MIR548AD-201ENST00000584780 82 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 SNORD92-201ENST00000585078 85 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AC005176.2-201ENST00000596933 147 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 RBM11P1-201ENST00000604951 799 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AC006157.1-201ENST00000611750 366 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AP002782.1-201ENST00000623107 614 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 MIR4251-201ENST00000635819 61 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AC005592.1-201ENST00000566527 1640 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.504-201ENST00000384481 104 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 MIR124-2-201ENST00000385081 109 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 RNU2-54P-201ENST00000410299 190 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 AC090844.1-201ENST00000422019 156 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 SNORD65B-201ENST00000459126 73 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 MIR378D2-201ENST00000580636 98 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 MIR6828-201ENST00000636181 60 ntBASIC-0.37□□□□□ -2.47
CHD9Q3L8U1 RNU6-227P-201ENST00000362865 103 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU6-161P-201ENST00000363051 106 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 SNORA69-201ENST00000383895 132 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.446-201ENST00000384178 104 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU6-903P-201ENST00000391270 109 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 MRPL42P3-201ENST00000401492 326 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 MLLT10P1-201ENST00000418346 262 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU7-185P-201ENST00000459215 60 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU7-138P-201ENST00000459479 64 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC114755.3-201ENST00000481111 251 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC091951.3-201ENST00000504093 246 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC091885.1-201ENST00000506658 268 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 Z94722.1-201ENST00000604328 474 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC138649.3-201ENST00000622154 254 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 MIR6514-201ENST00000622549 70 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU6-1322P-201ENST00000364309 107 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.302-201ENST00000364997 102 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU6-609P-201ENST00000365459 107 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 MRPL42P2-201ENST00000403169 426 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 HLA-S-202ENST00000425174 53 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 SNRPGP14-201ENST00000435400 219 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 snoU13.2-201ENST00000459201 104 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU6-274P-201ENST00000459566 107 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC107297.1-201ENST00000459991 176 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC005178.1-201ENST00000508392 440 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU6-504P-201ENST00000516568 104 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNA5SP54-201ENST00000516951 92 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 RNU6-201P-201ENST00000517100 61 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AL358944.1-201ENST00000528537 144 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 MTND4LP25-201ENST00000570218 163 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC011921.3-201ENST00000605540 361 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 AC022418.1-201ENST00000624118 445 ntBASIC-0.38□□□□□ -2.47
CHD9Q3L8U1 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC-0.39□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.186-201ENST00000363899 92 ntBASIC-0.39□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.39□□□□□ -2.47
CHD9Q3L8U1 RNU6-284P-201ENST00000411105 106 ntBASIC-0.39□□□□□ -2.47
CHD9Q3L8U1 SNORD83.1-201ENST00000411362 77 ntBASIC-0.39□□□□□ -2.47
CHD9Q3L8U1 AL390729.2-201ENST00000416137 156 ntBASIC-0.39□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 303.8 ms