Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AP002001.1-203ENST00000534002 267 ntBASIC0.47□□□□□ -2.33
FOXF1Q12946 SNORA4-201ENST00000584302 138 ntBASIC0.47□□□□□ -2.33
FOXF1Q12946 AL117336.2-201ENST00000602435 335 ntBASIC0.47□□□□□ -2.33
FOXF1Q12946 AC090617.10-201ENST00000624308 134 ntBASIC0.47□□□□□ -2.33
FOXF1Q12946 AC073544.1-201ENST00000600110 1595 ntBASIC0.47□□□□□ -2.33
FOXF1Q12946 Y_RNA.9-201ENST00000362354 101 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNA5SP347-201ENST00000362445 119 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 Y_RNA.106-201ENST00000363189 100 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 U8.5-201ENST00000364528 136 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU4-24P-201ENST00000364565 139 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU6-593P-201ENST00000364716 112 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU6-842P-201ENST00000384269 107 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU6-163P-201ENST00000384396 106 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU6-306P-201ENST00000384617 107 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU6-376P-201ENST00000384731 106 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU6-1001P-201ENST00000411265 100 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.46□□□□□ -2.34
FOXF1Q12946 MTND4LP16-201ENST00000440828 295 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 AC093019.1-201ENST00000443135 252 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 UQCRBP2-201ENST00000447827 297 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 AL157398.1-201ENST00000452981 186 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 AL049830.1-201ENST00000468034 425 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RPS29P25-201ENST00000481709 171 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 CYCTP-201ENST00000504253 315 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU7-12P-201ENST00000516030 62 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 RNU6-107P-201ENST00000516643 102 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 AC027419.1-201ENST00000522976 328 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.46□□□□□ -2.34
FOXF1Q12946 AL512605.2-201ENST00000592972 256 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 AC104260.1-201ENST00000616660 539 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 AC048344.4-201ENST00000619744 527 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 U6.115-201ENST00000636045 103 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 MTND5P16-201ENST00000460269 1703 ntBASIC0.46□□□□□ -2.34
FOXF1Q12946 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
FOXF1Q12946 Y_RNA.243-201ENST00000364481 109 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 Y_RNA.336-201ENST00000365307 109 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 SNORD116-2-201ENST00000384274 95 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 SNORD116-13-201ENST00000384408 92 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 RNU6-110P-201ENST00000384508 104 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 RNU6-831P-201ENST00000384548 107 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 SNORD116-6-201ENST00000384711 96 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 Y_RNA.573-201ENST00000384763 105 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 MIR605-201ENST00000385078 83 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 MIR942-201ENST00000401111 86 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 MIR891A-201ENST00000401237 79 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 AL139396.1-201ENST00000421137 167 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.45□□□□□ -2.34
FOXF1Q12946 AC098934.3-201ENST00000430450 190 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 USP9YP30-201ENST00000430729 455 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 FABP5P4-201ENST00000437203 171 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.45□□□□□ -2.34
FOXF1Q12946 RNU6-229P-201ENST00000516614 102 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 RNU6-566P-201ENST00000516790 107 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 AP003716.2-201ENST00000528260 108 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 AC018448.1-201ENST00000552843 316 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 MIR4762-201ENST00000585261 75 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 AF250324.2-201ENST00000608299 610 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.45□□□□□ -2.34
FOXF1Q12946 AC127459.3-201ENST00000624328 466 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.45□□□□□ -2.34
FOXF1Q12946 MIR3662-201ENST00000637030 95 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 AC005592.1-201ENST00000566527 1640 ntBASIC0.45□□□□□ -2.34
FOXF1Q12946 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.44□□□□□ -2.34
FOXF1Q12946 AL442644.1-201ENST00000454390 3105 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 RNU6-222P-201ENST00000362438 107 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 RNU6-1090P-201ENST00000364065 94 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 Y_RNA.267-201ENST00000364679 109 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 Y_RNA.301-201ENST00000364990 103 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 SNORA75.2-201ENST00000391138 150 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 SNORA75.3-201ENST00000391231 150 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 MTCYBP10-201ENST00000424905 650 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 PCNPP5-201ENST00000452246 481 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.44□□□□□ -2.34
FOXF1Q12946 SNORD111.1-201ENST00000516421 86 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 RNU6-1088P-201ENST00000516850 104 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 MIR2355-201ENST00000517199 87 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.44□□□□□ -2.34
FOXF1Q12946 EIF1P4-201ENST00000572664 335 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 AC005014.2-201ENST00000607795 599 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 AL096861.1-201ENST00000610899 123 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 AC015540.1-201ENST00000615828 501 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 AC022709.1-201ENST00000615967 87 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 U4.5-201ENST00000617137 123 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.44□□□□□ -2.34
FOXF1Q12946 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
FOXF1Q12946 Y_RNA.41-201ENST00000362646 102 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 Y_RNA.48-201ENST00000362710 103 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 Y_RNA.89-201ENST00000363031 102 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 RNU6-407P-201ENST00000365280 104 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.43□□□□□ -2.34
FOXF1Q12946 RNU6-42P-201ENST00000384165 107 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 MIR526A1-201ENST00000384897 85 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 MIR452-201ENST00000385020 85 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 MIR15B-201ENST00000385045 98 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 MIR518E-201ENST00000385252 88 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 RNU6-700P-201ENST00000391043 107 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.43□□□□□ -2.34
FOXF1Q12946 DLGAP5P1-201ENST00000430307 464 ntBASIC0.43□□□□□ -2.34
FOXF1Q12946 AC092628.1-201ENST00000436250 252 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 146.5 ms