Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL663109.1-201ENST00000411498 844 ntBASIC-0.11□□□□□ -2.43
CHD3Q12873 ELOCP21-201ENST00000412558 336 ntBASIC-0.11□□□□□ -2.43
CHD3Q12873 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.11□□□□□ -2.43
CHD3Q12873 AL358934.1-201ENST00000432346 324 ntBASIC-0.11□□□□□ -2.43
CHD3Q12873 ZNF114P1-201ENST00000453500 292 ntBASIC-0.11□□□□□ -2.43
CHD3Q12873 AC093027.1-201ENST00000546698 429 ntBASIC-0.11□□□□□ -2.43
CHD3Q12873 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.11□□□□□ -2.43
CHD3Q12873 MIR1-1-201ENST00000362147 71 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 RNU6-1303P-201ENST00000364841 107 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 RNU6-169P-201ENST00000365336 107 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 RNU6-157P-201ENST00000383957 107 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 MIR1298-201ENST00000408783 112 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.12□□□□□ -2.43
CHD3Q12873 TPTE2P5-203ENST00000458118 728 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 AC023442.1-201ENST00000531247 422 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.12□□□□□ -2.43
CHD3Q12873 U8.7-201ENST00000364940 136 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 MIR610-201ENST00000385139 96 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 RNA5SP266-201ENST00000410273 108 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 MTND2P18-201ENST00000419962 1030 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 MTND3P23-201ENST00000431980 347 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 snoU13.11-201ENST00000459219 104 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 AC026371.1-201ENST00000551867 419 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 MIR3913-1-201ENST00000577744 102 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 AP001506.1-201ENST00000615444 211 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.13□□□□□ -2.43
CHD3Q12873 AL590002.1-201ENST00000406554 418 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 ZNF885P-201ENST00000420174 1098 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 HMGN2P22-201ENST00000427588 175 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 AC018710.1-201ENST00000506509 158 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 RPL21P9-201ENST00000556149 474 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 MIR5696-201ENST00000578474 85 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 PIGPP4-201ENST00000584447 307 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 AC022306.3-201ENST00000619930 550 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-0.13□□□□□ -2.43
CHD3Q12873 AC005592.1-201ENST00000566527 1640 ntBASIC-0.13□□□□□ -2.43
CHD3Q12873 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.14□□□□□ -2.43
CHD3Q12873 SNORD118-201ENST00000363593 134 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 RNU6-929P-201ENST00000384429 107 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 AL606923.1-201ENST00000406616 190 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 MIR548H2-201ENST00000408874 88 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 MCFD2P1-201ENST00000417812 300 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 AC079354.2-201ENST00000453523 154 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 RNU7-187P-201ENST00000458985 68 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 AP000870.1-201ENST00000472927 406 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 AC112693.2-201ENST00000556538 232 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 MIR5583-1-201ENST00000580941 59 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 AL136370.1-201ENST00000608166 691 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 AL008636.1-201ENST00000625038 1018 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 MIR377-201ENST00000362145 69 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 SNORD114-12-201ENST00000365400 75 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 RNU6-46P-201ENST00000383860 107 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 SNORA69-201ENST00000383895 132 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 RNU6-1103P-201ENST00000384150 107 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 Y_RNA.537-201ENST00000384626 109 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 RNU7-102P-201ENST00000458948 62 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 AC093303.1-201ENST00000514549 295 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 AL137161.1-201ENST00000532231 390 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 uc_338.6-201ENST00000613544 171 ntBASIC-0.14□□□□□ -2.43
CHD3Q12873 snoU2-30.1-201ENST00000365012 70 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 MIR487A-201ENST00000385009 80 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 MIR760-201ENST00000390220 80 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 MTCO3P19-201ENST00000415864 321 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 RNU7-167P-201ENST00000459160 62 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.15□□□□□ -2.43
CHD3Q12873 RNU1-117P-201ENST00000517041 158 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.15□□□□□ -2.43
CHD3Q12873 MIR5692C1-201ENST00000585309 91 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 AP000811.1-201ENST00000603803 651 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 AP000753.3-201ENST00000604083 169 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 AC007671.2-201ENST00000637344 619 ntBASIC-0.15□□□□□ -2.43
CHD3Q12873 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.15□□□□□ -2.43
CHD3Q12873 Y_RNA.123-201ENST00000363338 102 ntBASIC-0.16□□□□□ -2.43
CHD3Q12873 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.16□□□□□ -2.43
CHD3Q12873 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.16□□□□□ -2.43
CHD3Q12873 MTCO2P33-201ENST00000402100 465 ntBASIC-0.16□□□□□ -2.43
CHD3Q12873 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-0.16□□□□□ -2.43
CHD3Q12873 AL008987.1-201ENST00000415528 237 ntBASIC-0.16□□□□□ -2.43
CHD3Q12873 USMG5P1-201ENST00000425964 177 ntBASIC-0.16□□□□□ -2.43
CHD3Q12873 AL009048.1-201ENST00000450437 298 ntBASIC-0.16□□□□□ -2.43
CHD3Q12873 AGGF1P4-201ENST00000568249 801 ntBASIC-0.16□□□□□ -2.43
CHD3Q12873 RNU6-1214P-201ENST00000363650 109 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 RNU6-580P-201ENST00000365159 107 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 RNU6-117P-201ENST00000365415 107 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 RNU5A-6P-201ENST00000384136 116 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 MIR593-201ENST00000384856 100 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.16□□□□□ -2.44
CHD3Q12873 SNORA40.3-201ENST00000390964 122 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 Z82188.1-201ENST00000436709 154 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 MTND1P26-201ENST00000440488 538 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 RNU7-125P-201ENST00000458760 62 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-0.16□□□□□ -2.44
CHD3Q12873 AC090897.1-201ENST00000580909 226 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 MIR548AR-201ENST00000582191 57 ntBASIC-0.16□□□□□ -2.44
CHD3Q12873 MIR4251-201ENST00000635819 61 ntBASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms