Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CTCFP49711 RNU6-475P-201ENST00000516073 104 ntBASIC1.94□□□□□ -2.1
CTCFP49711 AC084364.2-201ENST00000546924 395 ntBASIC1.94□□□□□ -2.1
CTCFP49711 MIR6078-201ENST00000611069 100 ntBASIC1.94□□□□□ -2.1
CTCFP49711 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.94□□□□□ -2.1
CTCFP49711 AC240442.1-201ENST00000616055 283 ntBASIC1.94□□□□□ -2.1
CTCFP49711 MIR6788-201ENST00000618842 66 ntBASIC1.94□□□□□ -2.1
CTCFP49711 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.94□□□□□ -2.1
CTCFP49711 U6.108-201ENST00000637764 58 ntBASIC1.94□□□□□ -2.1
CTCFP49711 Y_RNA.148-201ENST00000363557 117 ntBASIC1.93□□□□□ -2.1
CTCFP49711 MIR515-2-201ENST00000384883 83 ntBASIC1.93□□□□□ -2.1
CTCFP49711 MIR515-1-201ENST00000384884 83 ntBASIC1.93□□□□□ -2.1
CTCFP49711 AL355796.1-201ENST00000406706 323 ntBASIC1.93□□□□□ -2.1
CTCFP49711 SNORA31.17-201ENST00000516953 127 ntBASIC1.93□□□□□ -2.1
CTCFP49711 RNU7-128P-201ENST00000517247 62 ntBASIC1.93□□□□□ -2.1
CTCFP49711 HSBP1P1-201ENST00000555205 166 ntBASIC1.93□□□□□ -2.1
CTCFP49711 AC005828.6-201ENST00000606610 232 ntBASIC1.93□□□□□ -2.1
CTCFP49711 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.93□□□□□ -2.1
CTCFP49711 AC134503.1-201ENST00000633048 54 ntBASIC1.93□□□□□ -2.1
CTCFP49711 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CTCFP49711 AC091812.1-201ENST00000432235 1948 ntBASIC1.93□□□□□ -2.1
CTCFP49711 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.93□□□□□ -2.1
CTCFP49711 AC010615.1-201ENST00000594254 1764 ntBASIC1.93□□□□□ -2.1
CTCFP49711 Y_RNA.28-201ENST00000362554 111 ntBASIC1.92□□□□□ -2.1
CTCFP49711 Y_RNA.128-201ENST00000363391 112 ntBASIC1.92□□□□□ -2.1
CTCFP49711 SNORA63D-201ENST00000364359 132 ntBASIC1.92□□□□□ -2.1
CTCFP49711 SNORA20B-201ENST00000384220 132 ntBASIC1.92□□□□□ -2.1
CTCFP49711 RNU6-1105P-201ENST00000384774 107 ntBASIC1.92□□□□□ -2.1
CTCFP49711 MIR934-201ENST00000401241 83 ntBASIC1.92□□□□□ -2.1
CTCFP49711 MIR1302-11-201ENST00000408051 138 ntBASIC1.92□□□□□ -2.1
CTCFP49711 MIR1302-9-201ENST00000408365 138 ntBASIC1.92□□□□□ -2.1
CTCFP49711 MIR1302-10-201ENST00000408734 138 ntBASIC1.92□□□□□ -2.1
CTCFP49711 RNA5SP475-201ENST00000410568 110 ntBASIC1.92□□□□□ -2.1
CTCFP49711 AL354751.2-201ENST00000415471 210 ntBASIC1.92□□□□□ -2.1
CTCFP49711 MTCO2P12-201ENST00000427426 682 ntBASIC1.92□□□□□ -2.1
CTCFP49711 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.92□□□□□ -2.1
CTCFP49711 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.92□□□□□ -2.1
CTCFP49711 AC010598.1-201ENST00000510378 103 ntBASIC1.92□□□□□ -2.1
CTCFP49711 AC023442.1-201ENST00000531247 422 ntBASIC1.92□□□□□ -2.1
CTCFP49711 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.92□□□□□ -2.1
CTCFP49711 MIR3684-201ENST00000579779 74 ntBASIC1.92□□□□□ -2.1
CTCFP49711 FAM106DP-201ENST00000586416 501 ntBASIC1.92□□□□□ -2.1
CTCFP49711 MIR1302-2-201ENST00000607096 138 ntBASIC1.92□□□□□ -2.1
CTCFP49711 AC010205.1-201ENST00000616668 449 ntBASIC1.92□□□□□ -2.1
CTCFP49711 U6.73-201ENST00000619194 103 ntBASIC1.92□□□□□ -2.1
CTCFP49711 AC006435.5-201ENST00000624486 112 ntBASIC1.92□□□□□ -2.1
CTCFP49711 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.92□□□□□ -2.1
CTCFP49711 U6.115-201ENST00000636045 103 ntBASIC1.92□□□□□ -2.1
CTCFP49711 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CTCFP49711 SNORA72.2-201ENST00000365028 127 ntBASIC1.91□□□□□ -2.1
CTCFP49711 Y_RNA.433-201ENST00000384089 102 ntBASIC1.91□□□□□ -2.1
CTCFP49711 RNU6-1310P-201ENST00000384153 107 ntBASIC1.91□□□□□ -2.1
CTCFP49711 AC093852.1-201ENST00000503587 266 ntBASIC1.91□□□□□ -2.1
CTCFP49711 RNU2-12P-201ENST00000517216 168 ntBASIC1.91□□□□□ -2.1
CTCFP49711 RNA5SP437-201ENST00000517249 129 ntBASIC1.91□□□□□ -2.1
CTCFP49711 AC024995.1-201ENST00000523014 93 ntBASIC1.91□□□□□ -2.1
CTCFP49711 CBX3P4-201ENST00000538909 354 ntBASIC1.91□□□□□ -2.1
CTCFP49711 AC004467.1-201ENST00000615678 330 ntBASIC1.91□□□□□ -2.1
CTCFP49711 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.91□□□□□ -2.1
CTCFP49711 AC005592.1-201ENST00000566527 1640 ntBASIC1.91□□□□□ -2.1
CTCFP49711 RNU4-41P-201ENST00000364426 143 ntBASIC1.9□□□□□ -2.11
CTCFP49711 Y_RNA.243-201ENST00000364481 109 ntBASIC1.9□□□□□ -2.11
CTCFP49711 Y_RNA.251-201ENST00000364551 99 ntBASIC1.9□□□□□ -2.11
CTCFP49711 SNORA16.1-201ENST00000364597 132 ntBASIC1.9□□□□□ -2.11
CTCFP49711 RNU6-20P-201ENST00000384106 107 ntBASIC1.9□□□□□ -2.11
CTCFP49711 Y_RNA.458-201ENST00000384240 102 ntBASIC1.9□□□□□ -2.11
CTCFP49711 MIR520A-201ENST00000384862 85 ntBASIC1.9□□□□□ -2.11
CTCFP49711 MIR548P-201ENST00000408336 84 ntBASIC1.9□□□□□ -2.11
CTCFP49711 MTND1P14-201ENST00000427400 950 ntBASIC1.9□□□□□ -2.11
CTCFP49711 RPS26P45-201ENST00000471748 340 ntBASIC1.9□□□□□ -2.11
CTCFP49711 Y_RNA.711-201ENST00000516993 102 ntBASIC1.9□□□□□ -2.11
CTCFP49711 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.9□□□□□ -2.11
CTCFP49711 AC027419.1-201ENST00000522976 328 ntBASIC1.9□□□□□ -2.11
CTCFP49711 AC020661.2-201ENST00000560114 134 ntBASIC1.9□□□□□ -2.11
CTCFP49711 AC015720.1-201ENST00000565251 277 ntBASIC1.9□□□□□ -2.11
CTCFP49711 RN7SL793P-201ENST00000583259 296 ntBASIC1.9□□□□□ -2.11
CTCFP49711 AL359075.3-201ENST00000613288 217 ntBASIC1.9□□□□□ -2.11
CTCFP49711 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.9□□□□□ -2.11
CTCFP49711 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
CTCFP49711 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
CTCFP49711 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.89□□□□□ -2.11
CTCFP49711 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.89□□□□□ -2.11
CTCFP49711 Y_RNA.11-201ENST00000362375 109 ntBASIC1.89□□□□□ -2.11
CTCFP49711 Y_RNA.101-201ENST00000363154 102 ntBASIC1.89□□□□□ -2.11
CTCFP49711 RNU6-626P-201ENST00000363354 107 ntBASIC1.89□□□□□ -2.11
CTCFP49711 Y_RNA.361-201ENST00000365515 120 ntBASIC1.89□□□□□ -2.11
CTCFP49711 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
CTCFP49711 Y_RNA.645-201ENST00000391229 102 ntBASIC1.89□□□□□ -2.11
CTCFP49711 HSPE1P21-201ENST00000438283 308 ntBASIC1.89□□□□□ -2.11
CTCFP49711 MRPS10P1-201ENST00000448483 130 ntBASIC1.89□□□□□ -2.11
CTCFP49711 AL163195.1-201ENST00000496941 348 ntBASIC1.89□□□□□ -2.11
CTCFP49711 SNORA25.10-201ENST00000515926 124 ntBASIC1.89□□□□□ -2.11
CTCFP49711 Y_RNA.701-201ENST00000516812 110 ntBASIC1.89□□□□□ -2.11
CTCFP49711 AC040926.1-201ENST00000530195 238 ntBASIC1.89□□□□□ -2.11
CTCFP49711 AC023157.2-201ENST00000540596 141 ntBASIC1.89□□□□□ -2.11
CTCFP49711 MIR4438-201ENST00000585271 93 ntBASIC1.89□□□□□ -2.11
CTCFP49711 AC005176.2-201ENST00000596933 147 ntBASIC1.89□□□□□ -2.11
CTCFP49711 RPS29P30-201ENST00000600975 111 ntBASIC1.89□□□□□ -2.11
CTCFP49711 AL121655.1-201ENST00000605811 308 ntBASIC1.89□□□□□ -2.11
CTCFP49711 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms