Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RPL23AP50-201ENST00000434149 455 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 DYNLT3P2-201ENST00000442517 295 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 Y_RNA.635-201ENST00000459041 101 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 RNU6-120P-201ENST00000516077 103 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 RNU2-56P-201ENST00000516826 190 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.97□□□□□ -2.25
SHMT2P34897 RPL21P9-201ENST00000556149 474 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.97□□□□□ -2.25
SHMT2P34897 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.97□□□□□ -2.25
SHMT2P34897 AC092794.1-201ENST00000612734 582 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 U6atac.1-201ENST00000616025 117 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.97□□□□□ -2.25
SHMT2P34897 RNU6-199P-201ENST00000362954 107 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 Y_RNA.265-201ENST00000364677 108 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 Y_RNA.267-201ENST00000364679 109 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 MIR562-201ENST00000384894 95 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 MIR653-201ENST00000385279 96 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 MT-TL1-201ENST00000386347 75 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 SNORD12B-201ENST00000410433 91 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 Y_RNA.619-201ENST00000410951 90 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 RNU6-370P-201ENST00000411008 104 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 MTND1P2-201ENST00000430604 821 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.96□□□□□ -2.26
SHMT2P34897 RNU6-1278P-201ENST00000516130 107 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 RNU6-917P-201ENST00000516294 104 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 RNU6-1291P-201ENST00000516591 104 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 MIR2355-201ENST00000517199 87 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 AP002004.2-201ENST00000531656 154 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.96□□□□□ -2.26
SHMT2P34897 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.96□□□□□ -2.26
SHMT2P34897 AL513534.2-201ENST00000603836 250 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 AC087588.2-201ENST00000617667 426 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 TPTEP1-208ENST00000636884 213 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 AC005592.1-201ENST00000566527 1640 ntBASIC0.96□□□□□ -2.26
SHMT2P34897 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.95□□□□□ -2.26
SHMT2P34897 RNU6-1188P-201ENST00000363795 107 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 Y_RNA.243-201ENST00000364481 109 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 RNU6-1187P-201ENST00000364771 110 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 SNORD81.2-201ENST00000365153 76 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 RNU6-876P-201ENST00000391295 104 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 SNORA75.6-201ENST00000391318 127 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 MIR1276-201ENST00000408707 83 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 Y_RNA.646-201ENST00000410980 101 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.95□□□□□ -2.26
SHMT2P34897 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.95□□□□□ -2.26
SHMT2P34897 SUMO1P2-201ENST00000452524 304 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 MIR2053-201ENST00000459295 91 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 RPS23P4-201ENST00000487908 423 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.95□□□□□ -2.26
SHMT2P34897 AL022345.2-201ENST00000606307 135 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 AC022306.2-201ENST00000617563 647 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 AC027335.2-201ENST00000624030 375 ntBASIC0.95□□□□□ -2.26
SHMT2P34897 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
SHMT2P34897 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
SHMT2P34897 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SHMT2P34897 MIRLET7C-201ENST00000362160 84 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 SNORA25.9-201ENST00000365087 128 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 SNORA25-201ENST00000384384 134 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 RNU6-310P-201ENST00000384655 107 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 Y_RNA.577-201ENST00000384794 101 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 MIR222-201ENST00000384992 110 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 Y_RNA.599-201ENST00000410489 109 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 RNA5SP475-201ENST00000410568 110 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 RNU7-28P-201ENST00000516759 62 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 RNA5SP404-201ENST00000517118 132 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 RNU2-12P-201ENST00000517216 168 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 GHRLOS.1-201ENST00000610995 70 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.94□□□□□ -2.26
SHMT2P34897 AC127459.3-201ENST00000624328 466 ntBASIC0.94□□□□□ -2.26
SHMT2P34897 SNORD114-7-201ENST00000362520 77 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 SNORD114-27-201ENST00000363766 70 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 SNORD115-30-201ENST00000364117 82 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
SHMT2P34897 Y_RNA.592-201ENST00000410274 109 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 AC114482.1-201ENST00000418010 247 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 MTND4P28-201ENST00000426217 387 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 AC105758.1-201ENST00000506038 399 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 RNU7-40P-201ENST00000516397 64 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 RNU6-1096P-201ENST00000517089 102 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.93□□□□□ -2.26
SHMT2P34897 AC090049.2-201ENST00000550377 109 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 AC055872.1-201ENST00000570978 278 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
SHMT2P34897 BX284668.6-201ENST00000606899 438 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 MIR6504-201ENST00000613520 61 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 AL391516.1-201ENST00000554380 2449 ntBASIC0.93□□□□□ -2.26
SHMT2P34897 RNU6-961P-201ENST00000363893 105 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 RNU6-890P-201ENST00000384121 107 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 Y_RNA.474-201ENST00000384341 102 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 MIR520G-201ENST00000385064 90 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 SNORA69.1-201ENST00000390904 137 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 RNA5SP482-201ENST00000391269 118 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.92□□□□□ -2.26
SHMT2P34897 AC093850.1-201ENST00000454121 251 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 AC022493.2-201ENST00000506122 481 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 RNU6-408P-201ENST00000515910 100 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 SNORA31.2-201ENST00000516019 134 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms