Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RNU6-280P-201ENST00000364145 104 ntBASIC-0.14□□□□□ -2.43
APOEP02649 RNU4-28P-201ENST00000364739 141 ntBASIC-0.14□□□□□ -2.43
APOEP02649 RNU6-117P-201ENST00000365415 107 ntBASIC-0.14□□□□□ -2.43
APOEP02649 AC117470.1-201ENST00000381974 330 ntBASIC-0.14□□□□□ -2.43
APOEP02649 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-0.14□□□□□ -2.43
APOEP02649 AL133215.3-201ENST00000609801 448 ntBASIC-0.14□□□□□ -2.43
APOEP02649 AC127459.3-201ENST00000624328 466 ntBASIC-0.14□□□□□ -2.43
APOEP02649 AP000720.1-201ENST00000625091 483 ntBASIC-0.14□□□□□ -2.43
APOEP02649 Y_RNA.378-201ENST00000365652 113 ntBASIC-0.15□□□□□ -2.43
APOEP02649 RNU6-214P-201ENST00000384130 107 ntBASIC-0.15□□□□□ -2.43
APOEP02649 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.15□□□□□ -2.43
APOEP02649 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC-0.15□□□□□ -2.43
APOEP02649 RPL30P10-201ENST00000488148 337 ntBASIC-0.15□□□□□ -2.43
APOEP02649 RNU6-1332P-201ENST00000516666 104 ntBASIC-0.15□□□□□ -2.43
APOEP02649 MIR4290-201ENST00000583807 95 ntBASIC-0.15□□□□□ -2.43
APOEP02649 AL591926.4-201ENST00000616895 298 ntBASIC-0.15□□□□□ -2.43
APOEP02649 Y_RNA.201-201ENST00000364052 96 ntBASIC-0.16□□□□□ -2.44
APOEP02649 AL139396.1-201ENST00000421137 167 ntBASIC-0.16□□□□□ -2.44
APOEP02649 AL353572.1-201ENST00000442490 417 ntBASIC-0.16□□□□□ -2.44
APOEP02649 SNORA19.2-201ENST00000516013 114 ntBASIC-0.16□□□□□ -2.44
APOEP02649 RNU6-63P-201ENST00000516690 95 ntBASIC-0.16□□□□□ -2.44
APOEP02649 RNA5SP94-201ENST00000516917 108 ntBASIC-0.16□□□□□ -2.44
APOEP02649 AL158063.1-201ENST00000615349 536 ntBASIC-0.16□□□□□ -2.44
APOEP02649 SNORD118-201ENST00000363593 134 ntBASIC-0.17□□□□□ -2.44
APOEP02649 RNU6-82P-201ENST00000363970 107 ntBASIC-0.17□□□□□ -2.44
APOEP02649 Y_RNA.381-201ENST00000365666 102 ntBASIC-0.17□□□□□ -2.44
APOEP02649 MIR15B-201ENST00000385045 98 ntBASIC-0.17□□□□□ -2.44
APOEP02649 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.17□□□□□ -2.44
APOEP02649 MIR2115-201ENST00000516657 100 ntBASIC-0.17□□□□□ -2.44
APOEP02649 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.17□□□□□ -2.44
APOEP02649 PIGPP4-201ENST00000584447 307 ntBASIC-0.17□□□□□ -2.44
APOEP02649 U8.5-201ENST00000364528 136 ntBASIC-0.18□□□□□ -2.44
APOEP02649 MTCYBP4-201ENST00000401524 249 ntBASIC-0.18□□□□□ -2.44
APOEP02649 AL590632.1-201ENST00000424289 371 ntBASIC-0.18□□□□□ -2.44
APOEP02649 RNU7-125P-201ENST00000458760 62 ntBASIC-0.18□□□□□ -2.44
APOEP02649 RNU7-187P-201ENST00000458985 68 ntBASIC-0.18□□□□□ -2.44
APOEP02649 RNA5SP227-201ENST00000516184 113 ntBASIC-0.18□□□□□ -2.44
APOEP02649 RNU6-759P-201ENST00000516740 103 ntBASIC-0.18□□□□□ -2.44
APOEP02649 AC104408.1-201ENST00000605241 170 ntBASIC-0.18□□□□□ -2.44
APOEP02649 AF250324.2-201ENST00000608299 610 ntBASIC-0.18□□□□□ -2.44
APOEP02649 5S_rRNA.13-201ENST00000622298 123 ntBASIC-0.18□□□□□ -2.44
APOEP02649 AF246928.1-201ENST00000623768 87 ntBASIC-0.18□□□□□ -2.44
APOEP02649 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.19□□□□□ -2.44
APOEP02649 RNU4-21P-201ENST00000362802 126 ntBASIC-0.19□□□□□ -2.44
APOEP02649 RNU6-934P-201ENST00000365154 107 ntBASIC-0.19□□□□□ -2.44
APOEP02649 RNU6-700P-201ENST00000391043 107 ntBASIC-0.19□□□□□ -2.44
APOEP02649 RNU6-1158P-201ENST00000391167 107 ntBASIC-0.19□□□□□ -2.44
APOEP02649 Y_RNA.621-201ENST00000411065 96 ntBASIC-0.19□□□□□ -2.44
APOEP02649 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-0.19□□□□□ -2.44
APOEP02649 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-0.19□□□□□ -2.44
APOEP02649 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.19□□□□□ -2.44
APOEP02649 MTND1P26-201ENST00000440488 538 ntBASIC-0.19□□□□□ -2.44
APOEP02649 RNU6-1129P-201ENST00000515964 104 ntBASIC-0.19□□□□□ -2.44
APOEP02649 AC060788.1-201ENST00000521318 469 ntBASIC-0.19□□□□□ -2.44
APOEP02649 AC112693.2-201ENST00000556538 232 ntBASIC-0.19□□□□□ -2.44
APOEP02649 AC100830.2-201ENST00000581636 240 ntBASIC-0.19□□□□□ -2.44
APOEP02649 MIR4804-201ENST00000581683 73 ntBASIC-0.19□□□□□ -2.44
APOEP02649 MIR4762-201ENST00000585261 75 ntBASIC-0.19□□□□□ -2.44
APOEP02649 AC005609.4-201ENST00000625071 447 ntBASIC-0.19□□□□□ -2.44
APOEP02649 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.19□□□□□ -2.44
APOEP02649 FGF7P2-201ENST00000332473 296 ntBASIC-0.2□□□□□ -2.44
APOEP02649 SNORD114-5-201ENST00000362928 70 ntBASIC-0.2□□□□□ -2.44
APOEP02649 SNORD113-7-201ENST00000363762 77 ntBASIC-0.2□□□□□ -2.44
APOEP02649 RNU5F-3P-201ENST00000363767 117 ntBASIC-0.2□□□□□ -2.44
APOEP02649 RNU6-790P-201ENST00000384479 105 ntBASIC-0.2□□□□□ -2.44
APOEP02649 SNORD28B-201ENST00000390993 75 ntBASIC-0.2□□□□□ -2.44
APOEP02649 AC073464.1-201ENST00000429823 534 ntBASIC-0.2□□□□□ -2.44
APOEP02649 SEPT7P4-201ENST00000437076 306 ntBASIC-0.2□□□□□ -2.44
APOEP02649 Y_RNA.683-201ENST00000516508 93 ntBASIC-0.2□□□□□ -2.44
APOEP02649 MTND2P38-201ENST00000522536 667 ntBASIC-0.2□□□□□ -2.44
APOEP02649 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC-0.2□□□□□ -2.44
APOEP02649 RPL23AP91-201ENST00000569211 455 ntBASIC-0.2□□□□□ -2.44
APOEP02649 MIR4771-2-201ENST00000577758 74 ntBASIC-0.2□□□□□ -2.44
APOEP02649 MIR4771-1-201ENST00000582617 74 ntBASIC-0.2□□□□□ -2.44
APOEP02649 FAM157A-202ENST00000615155 405 ntBASIC-0.2□□□□□ -2.44
APOEP02649 AC067863.3-201ENST00000624172 122 ntBASIC-0.2□□□□□ -2.44
APOEP02649 SNORD45.3-201ENST00000363836 72 ntBASIC-0.21□□□□□ -2.44
APOEP02649 RNU6-553P-201ENST00000364047 96 ntBASIC-0.21□□□□□ -2.44
APOEP02649 SNORA8.2-201ENST00000384372 139 ntBASIC-0.21□□□□□ -2.44
APOEP02649 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.21□□□□□ -2.44
APOEP02649 SNORD11.1-201ENST00000459482 85 ntBASIC-0.21□□□□□ -2.44
APOEP02649 HMGN1P10-201ENST00000474557 553 ntBASIC-0.21□□□□□ -2.44
APOEP02649 MTCO2P30-201ENST00000503662 364 ntBASIC-0.21□□□□□ -2.44
APOEP02649 AC046134.1-201ENST00000514454 666 ntBASIC-0.21□□□□□ -2.44
APOEP02649 RNU6-232P-201ENST00000517144 64 ntBASIC-0.21□□□□□ -2.44
APOEP02649 AL355375.2-201ENST00000574825 175 ntBASIC-0.21□□□□□ -2.44
APOEP02649 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-0.21□□□□□ -2.44
APOEP02649 Y_RNA.151-201ENST00000363566 112 ntBASIC-0.22□□□□□ -2.44
APOEP02649 RNA5SP325-201ENST00000363756 130 ntBASIC-0.22□□□□□ -2.44
APOEP02649 RNU6-396P-201ENST00000365369 105 ntBASIC-0.22□□□□□ -2.44
APOEP02649 RNU6-38P-201ENST00000384085 107 ntBASIC-0.22□□□□□ -2.44
APOEP02649 RNU6-925P-201ENST00000384629 104 ntBASIC-0.22□□□□□ -2.44
APOEP02649 SNORA75.6-201ENST00000391318 127 ntBASIC-0.22□□□□□ -2.44
APOEP02649 MTND2P18-201ENST00000419962 1030 ntBASIC-0.22□□□□□ -2.44
APOEP02649 RNU7-56P-201ENST00000458744 62 ntBASIC-0.22□□□□□ -2.44
APOEP02649 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.22□□□□□ -2.44
APOEP02649 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC-0.22□□□□□ -2.44
APOEP02649 SNORD45.4-201ENST00000516629 73 ntBASIC-0.22□□□□□ -2.44
APOEP02649 MIR3684-201ENST00000579779 74 ntBASIC-0.22□□□□□ -2.44
APOEP02649 MIR548AR-201ENST00000582191 57 ntBASIC-0.22□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms