Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNA5SP270-201ENST00000411361 118 ntBASIC2.05□□□□□ -2.08
LDB3O75112 AC011753.1-201ENST00000451001 220 ntBASIC2.05□□□□□ -2.08
LDB3O75112 Y_RNA.662-201ENST00000516028 97 ntBASIC2.05□□□□□ -2.08
LDB3O75112 MIR4753-201ENST00000585119 83 ntBASIC2.05□□□□□ -2.08
LDB3O75112 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.05□□□□□ -2.08
LDB3O75112 RNU2-4P-201ENST00000606190 192 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.15-201ENST00000611544 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.16-201ENST00000613119 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.12-201ENST00000613778 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.9-201ENST00000615427 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.11-201ENST00000616345 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.2-201ENST00000616535 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.3-201ENST00000617785 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.19-201ENST00000618602 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 RNU2-1-201ENST00000618664 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.6-201ENST00000619225 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.5-201ENST00000619465 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U2.10-201ENST00000620268 191 ntBASIC2.05□□□□□ -2.08
LDB3O75112 U6.106-201ENST00000636360 105 ntBASIC2.05□□□□□ -2.08
LDB3O75112 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.05□□□□□ -2.08
LDB3O75112 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.05□□□□□ -2.08
LDB3O75112 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
LDB3O75112 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
LDB3O75112 MIRLET7G-201ENST00000362280 84 ntBASIC2.04□□□□□ -2.08
LDB3O75112 U3.8-201ENST00000363675 217 ntBASIC2.04□□□□□ -2.08
LDB3O75112 Y_RNA.262-201ENST00000364641 102 ntBASIC2.04□□□□□ -2.08
LDB3O75112 RNA5SP126-201ENST00000365092 109 ntBASIC2.04□□□□□ -2.08
LDB3O75112 RNU6-1130P-201ENST00000365434 107 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AL355796.1-201ENST00000406706 323 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AL356320.1-201ENST00000429616 163 ntBASIC2.04□□□□□ -2.08
LDB3O75112 TOMM22P2-201ENST00000430735 237 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AC074290.1-201ENST00000448883 135 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AC016717.1-201ENST00000448918 286 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.04□□□□□ -2.08
LDB3O75112 AL137159.1-201ENST00000452808 512 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AC016925.1-201ENST00000458303 298 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AC114982.1-201ENST00000469402 321 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AC093259.1-201ENST00000509755 300 ntBASIC2.04□□□□□ -2.08
LDB3O75112 RNA5SP200-201ENST00000516360 103 ntBASIC2.04□□□□□ -2.08
LDB3O75112 RNU7-193P-201ENST00000516723 65 ntBASIC2.04□□□□□ -2.08
LDB3O75112 Y_RNA.703-201ENST00000516846 111 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AC100767.1-201ENST00000528178 123 ntBASIC2.04□□□□□ -2.08
LDB3O75112 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.04□□□□□ -2.08
LDB3O75112 MIR5692C2-201ENST00000577959 77 ntBASIC2.04□□□□□ -2.08
LDB3O75112 MIR3144-201ENST00000579460 79 ntBASIC2.04□□□□□ -2.08
LDB3O75112 AC006380.1-201ENST00000603598 186 ntBASIC2.04□□□□□ -2.08
LDB3O75112 MIR6132-201ENST00000622083 109 ntBASIC2.04□□□□□ -2.08
LDB3O75112 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
LDB3O75112 AC005336.3-201ENST00000623833 2679 ntBASIC2.04□□□□□ -2.08
LDB3O75112 snoU2_19.4-201ENST00000364329 80 ntBASIC2.03□□□□□ -2.08
LDB3O75112 Y_RNA.412-201ENST00000384001 104 ntBASIC2.03□□□□□ -2.08
LDB3O75112 Y_RNA.435-201ENST00000384095 112 ntBASIC2.03□□□□□ -2.08
LDB3O75112 SNORA80E-201ENST00000384744 137 ntBASIC2.03□□□□□ -2.08
LDB3O75112 Y_RNA.571-201ENST00000384753 98 ntBASIC2.03□□□□□ -2.08
LDB3O75112 MTCO2P33-201ENST00000402100 465 ntBASIC2.03□□□□□ -2.08
LDB3O75112 SNORD23.1-201ENST00000408212 104 ntBASIC2.03□□□□□ -2.08
LDB3O75112 SNORA11.2-201ENST00000408318 127 ntBASIC2.03□□□□□ -2.08
LDB3O75112 MIR1185-2-201ENST00000408687 86 ntBASIC2.03□□□□□ -2.08
LDB3O75112 SNORA11.4-201ENST00000408823 129 ntBASIC2.03□□□□□ -2.08
LDB3O75112 RNA5SP425-201ENST00000410336 112 ntBASIC2.03□□□□□ -2.08
LDB3O75112 SRIP3-201ENST00000413200 219 ntBASIC2.03□□□□□ -2.08
LDB3O75112 AL135786.1-201ENST00000415892 214 ntBASIC2.03□□□□□ -2.08
LDB3O75112 AL392103.1-201ENST00000447000 198 ntBASIC2.03□□□□□ -2.08
LDB3O75112 AC091021.1-201ENST00000468051 388 ntBASIC2.03□□□□□ -2.08
LDB3O75112 RNU7-200P-201ENST00000516105 62 ntBASIC2.03□□□□□ -2.08
LDB3O75112 RNU6-991P-201ENST00000516168 107 ntBASIC2.03□□□□□ -2.08
LDB3O75112 SCARNA16.3-201ENST00000516595 184 ntBASIC2.03□□□□□ -2.08
LDB3O75112 PRELID2P1-201ENST00000552837 301 ntBASIC2.03□□□□□ -2.08
LDB3O75112 AC026271.5-201ENST00000577873 130 ntBASIC2.03□□□□□ -2.08
LDB3O75112 ZNF658B-202ENST00000615961 3375 ntBASIC2.03□□□□□ -2.08
LDB3O75112 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.02□□□□□ -2.09
LDB3O75112 AC009487.4-201ENST00000624969 3585 ntBASIC2.02□□□□□ -2.09
LDB3O75112 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
LDB3O75112 Y_RNA.310-201ENST00000365063 113 ntBASIC2.02□□□□□ -2.09
LDB3O75112 Y_RNA.332-201ENST00000365271 113 ntBASIC2.02□□□□□ -2.09
LDB3O75112 RN7SKP223-201ENST00000410582 62 ntBASIC2.02□□□□□ -2.09
LDB3O75112 AC123900.1-201ENST00000420390 96 ntBASIC2.02□□□□□ -2.09
LDB3O75112 TRBV12-1-201ENST00000479785 344 ntBASIC2.02□□□□□ -2.09
LDB3O75112 AC104435.1-201ENST00000483483 166 ntBASIC2.02□□□□□ -2.09
LDB3O75112 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.02□□□□□ -2.09
LDB3O75112 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.02□□□□□ -2.09
LDB3O75112 SCARNA8-201ENST00000515924 131 ntBASIC2.02□□□□□ -2.09
LDB3O75112 AC136628.3-201ENST00000521868 290 ntBASIC2.02□□□□□ -2.09
LDB3O75112 AC025754.2-201ENST00000606491 432 ntBASIC2.02□□□□□ -2.09
LDB3O75112 AC022202.1-201ENST00000613515 211 ntBASIC2.02□□□□□ -2.09
LDB3O75112 AC012640.5-201ENST00000623897 319 ntBASIC2.02□□□□□ -2.09
LDB3O75112 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.02□□□□□ -2.09
LDB3O75112 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.01□□□□□ -2.09
LDB3O75112 SNORA72.4-201ENST00000384174 132 ntBASIC2.01□□□□□ -2.09
LDB3O75112 RNU6-975P-201ENST00000384296 105 ntBASIC2.01□□□□□ -2.09
LDB3O75112 SNORD116-13-201ENST00000384408 92 ntBASIC2.01□□□□□ -2.09
LDB3O75112 RNU6-855P-201ENST00000410395 104 ntBASIC2.01□□□□□ -2.09
LDB3O75112 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LDB3O75112 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.01□□□□□ -2.09
LDB3O75112 RNU7-141P-201ENST00000459304 62 ntBASIC2.01□□□□□ -2.09
LDB3O75112 RNU6-948P-201ENST00000516374 107 ntBASIC2.01□□□□□ -2.09
LDB3O75112 RNU6-453P-201ENST00000516819 85 ntBASIC2.01□□□□□ -2.09
LDB3O75112 SNORA31.25-201ENST00000517242 134 ntBASIC2.01□□□□□ -2.09
LDB3O75112 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.01□□□□□ -2.09
LDB3O75112 MIR1273D-201ENST00000577266 86 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms