Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 U2.9-201ENST00000615427 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.11-201ENST00000616345 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.2-201ENST00000616535 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.3-201ENST00000617785 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.19-201ENST00000618602 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 RNU2-1-201ENST00000618664 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.6-201ENST00000619225 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.5-201ENST00000619465 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.10-201ENST00000620268 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXN3O00409 Y_RNA.243-201ENST00000364481 109 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 Y_RNA.275-201ENST00000364726 110 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 SNORA20B-201ENST00000384220 132 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 RNU6-1289P-201ENST00000384431 106 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 RNA5SP323-201ENST00000391094 133 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 AL355796.1-201ENST00000406706 323 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 RNU4-53P-201ENST00000410828 140 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 RNA5SP501-201ENST00000410990 112 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 OOSP1P1-201ENST00000423265 274 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 SUMO1P2-201ENST00000452524 304 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXN3O00409 AC010409.1-201ENST00000487382 476 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 RNVU1-2-201ENST00000516326 135 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 SNORA81.3-201ENST00000517283 198 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 MIR4435-1-201ENST00000582552 80 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 AC005786.1-201ENST00000588553 154 ntBASIC2.33□□□□□ -2.04
FOXN3O00409 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXN3O00409 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
FOXN3O00409 SNORA33-201ENST00000363664 130 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 Y_RNA.199-201ENST00000364014 102 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 Y_RNA.287-201ENST00000364853 94 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 Y_RNA.329-201ENST00000365209 107 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 RNA5SP467-201ENST00000391274 118 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 SNORA11.4-201ENST00000408823 129 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 AL139156.1-201ENST00000412785 841 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 AL353689.1-201ENST00000438895 199 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXN3O00409 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 RNY3P16-201ENST00000516338 101 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 AL512605.2-201ENST00000592972 256 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 AC022513.1-201ENST00000624512 117 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 MIR338-201ENST00000636369 67 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 AC008555.8-201ENST00000623602 2168 ntBASIC2.32□□□□□ -2.04
FOXN3O00409 ZNF702P-202ENST00000434269 1966 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 MIR411-201ENST00000362239 96 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 SNORD114-7-201ENST00000362520 77 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 Y_RNA.83-201ENST00000363005 113 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
FOXN3O00409 SNORA48.3-201ENST00000391081 134 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 MIR548I3-201ENST00000408378 149 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 MIR548I1-201ENST00000408810 149 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 RNU2-61P-201ENST00000411069 191 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXN3O00409 AC024067.1-201ENST00000426199 223 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 AL121890.1-201ENST00000435457 205 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 AC099677.2-201ENST00000436385 175 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 AC010598.1-201ENST00000510378 103 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 AC022559.1-201ENST00000520905 205 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 AC091544.4-201ENST00000555268 342 ntBASIC2.31□□□□□ -2.04
FOXN3O00409 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXN3O00409 Y_RNA.122-201ENST00000363331 96 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 Y_RNA.124-201ENST00000363339 93 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 RNY1-201ENST00000364228 113 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 RNU6-923P-201ENST00000364753 107 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 Y_RNA.292-201ENST00000364904 97 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 Y_RNA.361-201ENST00000365515 120 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 SNORD58.1-201ENST00000391313 66 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 AL512604.1-201ENST00000404812 257 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 Y_RNA.793-201ENST00000411222 111 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 Y_RNA.626-201ENST00000411288 95 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 RNA5SP508-201ENST00000411327 119 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 MTND2P29-201ENST00000438595 412 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 SUMO1P3-201ENST00000439961 304 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 RNU6-191P-201ENST00000516295 94 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 SCARNA16.3-201ENST00000516595 184 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 AL137100.2-201ENST00000555786 315 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 MIR4438-201ENST00000585271 93 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 AL627230.6-201ENST00000611129 280 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 AC006435.5-201ENST00000624486 112 ntBASIC2.3□□□□□ -2.04
FOXN3O00409 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.29□□□□□ -2.04
FOXN3O00409 Y_RNA.29-201ENST00000362570 113 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 Y_RNA.136-201ENST00000363444 102 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 SNORD115-30-201ENST00000364117 82 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 RNU6-47P-201ENST00000383866 107 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 AL031003.1-201ENST00000404229 172 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 BTF3P11-201ENST00000426582 477 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 Y_RNA.644-201ENST00000459006 113 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 AC079804.2-201ENST00000490376 200 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 Y_RNA.674-201ENST00000516362 113 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 SNORA27.4-201ENST00000516650 95 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 RNU6-182P-201ENST00000516970 105 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 AC004792.1-201ENST00000614523 137 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.29□□□□□ -2.04
FOXN3O00409 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
FOXN3O00409 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
FOXN3O00409 SNORA8-201ENST00000384574 139 ntBASIC2.28□□□□□ -2.04
FOXN3O00409 RNU6-493P-201ENST00000391321 108 ntBASIC2.28□□□□□ -2.04
FOXN3O00409 AL117342.1-201ENST00000404861 406 ntBASIC2.28□□□□□ -2.04
FOXN3O00409 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXN3O00409 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 163.3 ms