Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RNU6-1009P-201ENST00000390996 107 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 AC096644.2-201ENST00000429278 159 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.19□□□□□ -2.22
PDLIM1O00151 AL137792.2-201ENST00000443484 235 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 FCF1P4-201ENST00000448326 183 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 AC009474.2-201ENST00000451383 136 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 AC233266.1-201ENST00000454518 96 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 AC091021.1-201ENST00000468051 388 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 RNU6-875P-201ENST00000516488 106 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 RNU6-699P-201ENST00000517081 110 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.19□□□□□ -2.22
PDLIM1O00151 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.19□□□□□ -2.22
PDLIM1O00151 AC019288.1-201ENST00000557918 224 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 AC006380.1-201ENST00000603598 186 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 AC242852.1-201ENST00000612151 96 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 U2.1-201ENST00000618978 145 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 AC244015.1-201ENST00000622301 99 ntBASIC1.19□□□□□ -2.22
PDLIM1O00151 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
PDLIM1O00151 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
PDLIM1O00151 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.19□□□□□ -2.22
PDLIM1O00151 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.18□□□□□ -2.22
PDLIM1O00151 Y_RNA.124-201ENST00000363339 93 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 SNORA7.1-201ENST00000363750 139 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 Y_RNA.243-201ENST00000364481 109 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 SNORD116-29-201ENST00000384516 83 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 MIR559-201ENST00000385188 96 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 MIR618-201ENST00000385287 98 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.18□□□□□ -2.22
PDLIM1O00151 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.18□□□□□ -2.22
PDLIM1O00151 RPS29P28-201ENST00000446439 141 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 RNU1-123P-201ENST00000458950 160 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 RPL30P7-201ENST00000479312 323 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 RNU6-1291P-201ENST00000516591 104 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 RAB11AP2-201ENST00000545905 639 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 MIR4801-201ENST00000582704 82 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 MIR3660-201ENST00000584845 100 ntBASIC1.18□□□□□ -2.22
PDLIM1O00151 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
PDLIM1O00151 SNORA22-201ENST00000383907 134 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 RNU6-1040P-201ENST00000383974 107 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 Y_RNA.428-201ENST00000384078 102 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 RNY3P4-201ENST00000384428 101 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 SNORA22C-201ENST00000384614 134 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 SNORD78.2-201ENST00000391076 69 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.17□□□□□ -2.22
PDLIM1O00151 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.17□□□□□ -2.22
PDLIM1O00151 MTND5P20-201ENST00000448677 143 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 Y_RNA.632-201ENST00000459189 102 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 OR2A41P-201ENST00000473586 105 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 AC004223.1-201ENST00000479840 271 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 RNU6-341P-201ENST00000516973 96 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 RNU1-92P-201ENST00000517017 135 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.17□□□□□ -2.22
PDLIM1O00151 MIR548S-201ENST00000581352 82 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 AC011476.5-201ENST00000615594 130 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 AL513423.1-201ENST00000621695 132 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 AC106754.2-201ENST00000623006 233 ntBASIC1.17□□□□□ -2.22
PDLIM1O00151 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
PDLIM1O00151 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
PDLIM1O00151 Y_RNA.70-201ENST00000362886 110 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 RNU6-626P-201ENST00000363354 107 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 Y_RNA.187-201ENST00000363918 113 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 Y_RNA.529-201ENST00000384586 119 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.16□□□□□ -2.22
PDLIM1O00151 RNU6-507P-201ENST00000516045 100 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 RNU6-63P-201ENST00000516690 95 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 RNU7-28P-201ENST00000516759 62 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 SNORD116.3-201ENST00000517176 78 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 AP002004.2-201ENST00000531656 154 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 CYP3A52P-201ENST00000563326 91 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 AC055872.1-201ENST00000570978 278 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 MIR4778-201ENST00000577635 80 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 MIR4659A-201ENST00000580269 81 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 AC005176.2-201ENST00000596933 147 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 AC005828.6-201ENST00000606610 232 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 AC103810.9-201ENST00000606688 112 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.16□□□□□ -2.22
PDLIM1O00151 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.16□□□□□ -2.22
PDLIM1O00151 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.23
PDLIM1O00151 SNORA1B-201ENST00000362535 133 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 Y_RNA.146-201ENST00000363549 102 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 RNU4-76P-201ENST00000364509 141 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 RNU6-20P-201ENST00000384106 107 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 MIR660-201ENST00000385235 97 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 SNORA12.1-201ENST00000390873 148 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 SNORA40.6-201ENST00000391153 128 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 AC236972.2-201ENST00000434979 310 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 AL049830.1-201ENST00000468034 425 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 FGF7P4-201ENST00000509595 295 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 Y_RNA.661-201ENST00000516003 99 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 SNORA70.12-201ENST00000516084 153 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 RNA5SP168-201ENST00000516642 112 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 Y_RNA.702-201ENST00000516843 96 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.15□□□□□ -2.23
PDLIM1O00151 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.15□□□□□ -2.23
PDLIM1O00151 AL512310.8-201ENST00000550183 120 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 AC006600.1-201ENST00000572529 153 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 AC091178.2-201ENST00000584401 117 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 MIR8065-201ENST00000620577 100 ntBASIC1.15□□□□□ -2.23
PDLIM1O00151 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
PDLIM1O00151 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms