Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 Y_RNA.673-201ENST00000516306 88 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 SCARNA16.3-201ENST00000516595 184 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 AL137100.2-201ENST00000555786 315 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 MIR3145-201ENST00000580727 82 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 MIR4672-201ENST00000583126 81 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 AL031274.2-201ENST00000599419 203 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 AL353149.1-201ENST00000610667 244 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 RN7SL853P-201ENST00000617250 223 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 AC141273.2-201ENST00000618989 130 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 MIR6132-201ENST00000622083 109 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 MIR449A-201ENST00000362113 91 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.54-201ENST00000362766 105 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.275-201ENST00000364726 110 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.477-201ENST00000384352 108 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 SNORD58.1-201ENST00000391313 66 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 AC090255.1-201ENST00000495779 349 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 RPL21P9-201ENST00000556149 474 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 AC009127.3-201ENST00000570531 403 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 AL162424.1-201ENST00000602325 221 ntBASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.52□□□□□ -2.01
LIMCH1Q9UPQ0 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 RNA5SP493-201ENST00000364115 91 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 SNORD114-6-201ENST00000364393 72 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-1164P-201ENST00000364428 107 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 RNA5SP37-201ENST00000365420 130 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.456-201ENST00000384232 111 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 RNU11-5P-201ENST00000391216 129 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 RPS26P55-201ENST00000471178 356 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 RNA5SP20-201ENST00000515976 84 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 AC136628.3-201ENST00000521868 290 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 AC078938.1-201ENST00000620993 318 ntBASIC2.51□□□□□ -2.01
LIMCH1Q9UPQ0 RNU1-58P-201ENST00000362413 163 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 snoU2-30.2-201ENST00000362805 70 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.60-201ENST00000362831 98 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-23P-201ENST00000363283 107 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 SNORD27-201ENST00000363981 72 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.277-201ENST00000364754 102 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-407P-201ENST00000365280 104 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.368-201ENST00000365547 113 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 ATP5J2P3-201ENST00000451550 258 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 RPS27P22-201ENST00000478056 241 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 RNU4-71P-201ENST00000516258 113 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 MIR5694-201ENST00000581190 76 ntBASIC2.5□□□□□ -2.01
LIMCH1Q9UPQ0 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-301P-201ENST00000384277 107 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 MIR515-2-201ENST00000384883 83 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 MIR515-1-201ENST00000384884 83 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 MIR524-201ENST00000385242 87 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 HMGN2P34-201ENST00000437647 269 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 AL021397.1-201ENST00000451806 248 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 AC025033.1-201ENST00000463883 194 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 AC022202.1-201ENST00000613515 211 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 AL078604.3-201ENST00000615580 211 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 AP000553.5-201ENST00000641933 54 ntBASIC2.49□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.82-201ENST00000363000 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.92-201ENST00000363043 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.124-201ENST00000363339 93 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.217-201ENST00000364214 105 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.235-201ENST00000364412 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-740P-201ENST00000364734 105 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 RNA5SP160-201ENST00000364866 120 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.306-201ENST00000365015 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.312-201ENST00000365089 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.322-201ENST00000365151 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.341-201ENST00000365341 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.515-201ENST00000384535 112 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-855P-201ENST00000410395 104 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 OOSP1P1-201ENST00000423265 274 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.650-201ENST00000459002 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-717P-201ENST00000459076 104 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.641-201ENST00000459414 105 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 RPL36AP21-201ENST00000490372 323 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-1041P-201ENST00000516254 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.777-201ENST00000516982 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 IGLV3-17-201ENST00000519099 244 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 AC027419.1-201ENST00000522976 328 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 MIR3169-201ENST00000578032 83 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 MIR4438-201ENST00000585271 93 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 AC104984.5-201ENST00000586878 94 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.771-201ENST00000598668 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 AC010900.2-201ENST00000604508 210 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 U6.73-201ENST00000619194 103 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.789-201ENST00000622480 102 ntBASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.48□□□□□ -2.01
LIMCH1Q9UPQ0 SNORD115-3-201ENST00000363100 82 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 Y_RNA.590-201ENST00000410140 107 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms