Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 Y_RNA.571-201ENST00000384753 98 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 MIR515-2-201ENST00000384883 83 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 MIR515-1-201ENST00000384884 83 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 MIR144-201ENST00000384886 86 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 AC016909.1-201ENST00000415916 166 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 AC011753.1-201ENST00000451001 220 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 RNU7-141P-201ENST00000459304 62 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 AC005840.1-201ENST00000498412 377 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 RNU6-861P-201ENST00000516745 106 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 AC005000.2-201ENST00000605468 310 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 AL353149.1-201ENST00000610667 244 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 MIR548AY-201ENST00000617669 107 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 AL137790.1-201ENST00000634283 177 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 AC134026.1-201ENST00000623249 2239 ntBASIC2.4□□□□□ -2.03
VSX1Q9NZR4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VSX1Q9NZR4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
VSX1Q9NZR4 Y_RNA.124-201ENST00000363339 93 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 Y_RNA.238-201ENST00000364441 102 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 Y_RNA.293-201ENST00000364908 93 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 RNU6-160P-201ENST00000384591 107 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 MIR562-201ENST00000384894 95 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 RNU6-493P-201ENST00000391321 108 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 PCNPP3-201ENST00000393579 471 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 AC018634.1-201ENST00000437554 401 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 AL135938.1-201ENST00000443141 297 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 HMGB3P3-201ENST00000510526 400 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.39□□□□□ -2.03
VSX1Q9NZR4 RN7SKP132-201ENST00000516001 208 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 MIR4724-201ENST00000579485 89 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 MIR4308-201ENST00000580634 81 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 U6.73-201ENST00000619194 103 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 AC068647.2-201ENST00000637380 353 ntBASIC2.39□□□□□ -2.03
VSX1Q9NZR4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.39□□□□□ -2.03
VSX1Q9NZR4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VSX1Q9NZR4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
VSX1Q9NZR4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.38□□□□□ -2.03
VSX1Q9NZR4 Y_RNA.23-201ENST00000362496 106 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 Y_RNA.75-201ENST00000362927 97 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 RNU4-13P-201ENST00000364019 141 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 SNORA25.6-201ENST00000364121 118 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 RNU1-96P-201ENST00000364163 162 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 RNU1-112P-201ENST00000364401 164 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 RNU6-117P-201ENST00000365415 107 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 MIR29C-201ENST00000385231 88 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 MIR548M-201ENST00000408260 86 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 AC087499.2-201ENST00000432861 149 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 AL162725.1-201ENST00000435405 301 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 AC021269.2-201ENST00000532318 330 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.38□□□□□ -2.03
VSX1Q9NZR4 LARP7P3-201ENST00000579888 337 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.38□□□□□ -2.03
VSX1Q9NZR4 MIR4438-201ENST00000585271 93 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 POLR3GP1-201ENST00000594073 261 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 AC004832.4-201ENST00000608952 331 ntBASIC2.38□□□□□ -2.03
VSX1Q9NZR4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VSX1Q9NZR4 MIR367-201ENST00000362299 68 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 RNU1-22P-201ENST00000363334 158 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 RNU6-674P-201ENST00000363831 107 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 U8.7-201ENST00000364940 136 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 Y_RNA.441-201ENST00000384123 112 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 RNY3P5-201ENST00000384127 102 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 MIR9-1-201ENST00000385198 89 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 AL135786.1-201ENST00000415892 214 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 RNU7-26P-201ENST00000458980 63 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.37□□□□□ -2.03
VSX1Q9NZR4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.37□□□□□ -2.03
VSX1Q9NZR4 AC011406.1-201ENST00000512440 370 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.37□□□□□ -2.03
VSX1Q9NZR4 AC097462.1-201ENST00000514125 324 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 RNY3P16-201ENST00000516338 101 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 SNORA31.11-201ENST00000516528 139 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 RNU7-172P-201ENST00000517125 64 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 CYCSP26-201ENST00000534107 320 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 MRPS18CP4-201ENST00000535821 231 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 AC127455.1-201ENST00000565496 145 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 MIR2681-201ENST00000581814 105 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 MIR4635-201ENST00000583759 79 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 AC007229.1-201ENST00000590455 412 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 AC108706.1-201ENST00000611053 297 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 AL391903.3-201ENST00000612158 163 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 MIR6895-201ENST00000613497 78 ntBASIC2.37□□□□□ -2.03
VSX1Q9NZR4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VSX1Q9NZR4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VSX1Q9NZR4 AL356292.1-201ENST00000283110 373 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 MIR340-201ENST00000362125 95 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 snoU2-30.2-201ENST00000362805 70 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 SNORA38-201ENST00000363946 132 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 SNORA72-201ENST00000384339 132 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 RNU6-1072P-201ENST00000384703 107 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 RNU6-443P-201ENST00000384780 107 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 MIR520G-201ENST00000385064 90 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 MIR616-201ENST00000385293 97 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 RNA5SP496-201ENST00000391240 109 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 RNU6-381P-201ENST00000391259 108 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 AL512604.1-201ENST00000404812 257 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 SNORA36B-201ENST00000410438 131 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 EBAG9P1-201ENST00000418955 543 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 AC060773.1-201ENST00000421698 310 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 AC063976.3-201ENST00000426849 329 ntBASIC2.36□□□□□ -2.03
VSX1Q9NZR4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms