Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MIR3684-201ENST00000579779 74 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 AC019193.3-201ENST00000609144 554 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 AC073544.1-201ENST00000600110 1595 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.212-201ENST00000364177 102 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 RNU6-1119P-201ENST00000384349 108 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.530-201ENST00000384587 101 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 RNU6-306P-201ENST00000384617 107 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 MIR452-201ENST00000385020 85 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 MIR23A-201ENST00000385245 73 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 MTCYBP4-201ENST00000401524 249 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 USP9YP16-201ENST00000430287 407 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 PCNPP5-201ENST00000452246 481 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 USP9YP23-201ENST00000455085 407 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AC002350.1-201ENST00000490759 375 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 RN7SKP12-201ENST00000516275 143 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 DEFB108E-201ENST00000524692 240 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AL512360.1-201ENST00000555346 234 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AC125232.2-201ENST00000592457 143 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AL359821.1-201ENST00000605519 182 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AC092954.2-201ENST00000609103 430 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 AC027279.3-201ENST00000625055 122 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 ZNF299P-201ENST00000406845 1804 ntBASIC0.31□□□□□ -2.36
VCX3AQ9NNX9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.256-201ENST00000364594 104 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 SNORD116-8-201ENST00000384365 95 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 RNU6-780P-201ENST00000391030 104 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 MIR873-201ENST00000401120 77 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 ELOCP21-201ENST00000412558 336 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 MRPS18CP6-201ENST00000423587 223 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 UQCRBP2-201ENST00000447827 297 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 RPS20P10-201ENST00000451209 253 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 RNU4-57P-201ENST00000515980 135 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 MIR3672-201ENST00000584290 82 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 AC016727.1-205ENST00000605437 569 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 DISC2.1-201ENST00000612827 205 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 AL357075.2-201ENST00000614906 189 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 AC127459.3-201ENST00000624328 466 ntBASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.3□□□□□ -2.36
VCX3AQ9NNX9 RNU6-595P-201ENST00000363944 107 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.490-201ENST00000384413 102 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 RNU6-908P-201ENST00000410160 94 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 USMG5P1-201ENST00000425964 177 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 AC067940.1-201ENST00000458411 300 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 AC114811.1-201ENST00000507207 168 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 TRMT112P2-201ENST00000512910 132 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 RNA5SP458-201ENST00000516188 119 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 RNU6-1281P-201ENST00000516223 105 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.706-201ENST00000516933 99 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 AF235103.2-201ENST00000525753 346 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 OSBPL9P5-201ENST00000542581 171 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 MIR4524B-201ENST00000581569 115 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 MIR3611-201ENST00000584484 83 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 AL162413.1-201ENST00000603198 110 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 AC005828.6-201ENST00000606610 232 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 AL136317.1-201ENST00000612653 226 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 AC124864.2-201ENST00000624736 186 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 U6.115-201ENST00000636045 103 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.29□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.106-201ENST00000363189 100 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 RNU6-259P-201ENST00000383999 107 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.414-201ENST00000384011 101 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 RNU6-136P-201ENST00000384663 107 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 MIR520C-201ENST00000385005 87 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 MIR329-1-201ENST00000385028 80 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 SNORD105-201ENST00000386910 85 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 MIR1298-201ENST00000408783 112 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.595-201ENST00000410403 105 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 RNU6-994P-201ENST00000410507 111 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 AC019235.1-201ENST00000503847 207 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 RNU6-405P-201ENST00000516637 110 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.704-201ENST00000516851 102 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 AC100812.1-201ENST00000607622 580 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 MIR6516-201ENST00000630554 81 ntBASIC0.28□□□□□ -2.36
VCX3AQ9NNX9 MIR410-201ENST00000362222 80 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 MIRLET7D-201ENST00000362263 87 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 RNA5SP347-201ENST00000362445 119 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 RNU6-451P-201ENST00000362921 107 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 SNORD68-201ENST00000363214 84 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 RNA5SP48-201ENST00000363969 126 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 U8.5-201ENST00000364528 136 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 RNU6-596P-201ENST00000365395 98 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 RNU6-1042P-201ENST00000384204 107 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 MIR516B2-201ENST00000385190 85 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 RNU2-66P-201ENST00000410650 161 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 EIF1P2-201ENST00000428233 350 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms