Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SNORA22-201ENST00000383907 134 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 SNORA22C-201ENST00000384614 134 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 Y_RNA.557-201ENST00000384680 107 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 MIR329-1-201ENST00000385028 80 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 RNU6-510P-201ENST00000391239 108 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 RNU6-192P-201ENST00000391253 100 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 RNU1-139P-201ENST00000391307 165 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 ELOCP21-201ENST00000412558 336 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 EIF1P2-201ENST00000428233 350 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 MTND1P34-201ENST00000438556 671 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 RPS27P22-201ENST00000478056 241 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AC010469.2-201ENST00000496412 480 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 SNORA70.22-201ENST00000517160 124 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AP002001.1-203ENST00000534002 267 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 MIR4438-201ENST00000585271 93 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AC011712.1-201ENST00000588959 234 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AL390123.1-201ENST00000603216 237 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AL021879.1-201ENST00000611756 288 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 MIR1244-1-201ENST00000612829 85 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 U6.73-201ENST00000619194 103 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AC106754.2-201ENST00000623006 233 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 MIR1244-3-201ENST00000635744 85 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 MIR1244-2-201ENST00000636449 85 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 MIR1244-4-202ENST00000636813 85 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 AL391516.1-201ENST00000554380 2449 ntBASIC1.04□□□□□ -2.24
TM9SF3Q9HD45 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 RNU6-879P-201ENST00000364328 108 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 Y_RNA.358-201ENST00000365491 99 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 RNU6-1031P-201ENST00000384773 107 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 MIR613-201ENST00000385248 95 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 MIR190B-201ENST00000401119 79 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 AL355796.1-201ENST00000406706 323 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 Y_RNA.619-201ENST00000410951 90 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 AC074085.1-201ENST00000413598 418 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 AC092423.1-201ENST00000430165 186 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 RPL39P38-201ENST00000467018 153 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 AC022868.1-201ENST00000517767 391 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 SNORD114-21-201ENST00000606412 72 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 AC068137.4-201ENST00000638485 296 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 CASC19-280ENST00000642102 1351 ntBASIC1.03□□□□□ -2.24
TM9SF3Q9HD45 RNU6-1266P-201ENST00000362794 105 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 Y_RNA.160-201ENST00000363677 92 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 RNU6-440P-201ENST00000390882 105 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 UQCRBP2-201ENST00000447827 297 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 AC107399.1-201ENST00000451226 265 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 NDUFB4P10-201ENST00000452541 359 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 AC046134.1-201ENST00000514454 666 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 Y_RNA.708-201ENST00000516950 96 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 MTND4LP26-201ENST00000518144 282 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 AC105029.1-201ENST00000520250 669 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 AC022432.1-201ENST00000595739 310 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 AC098679.4-201ENST00000624241 654 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.02□□□□□ -2.25
TM9SF3Q9HD45 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 RNU6-407P-201ENST00000365280 104 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 SNORA20B-201ENST00000384220 132 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 RNU6-318P-201ENST00000384283 103 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 Y_RNA.490-201ENST00000384413 102 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 RN7SKP200-201ENST00000410564 320 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 PDCL2P1-201ENST00000419302 352 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 APOOP3-201ENST00000536787 586 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 MIR4778-201ENST00000577635 80 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.01□□□□□ -2.25
TM9SF3Q9HD45 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1□□□□□ -2.25
TM9SF3Q9HD45 MIR373-201ENST00000362273 69 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 Y_RNA.124-201ENST00000363339 93 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 RNU6-99P-201ENST00000364721 107 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 Y_RNA.364-201ENST00000365532 101 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 RNU6-1145P-201ENST00000384246 107 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 RNU6-700P-201ENST00000391043 107 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 SNORA75.4-201ENST00000391278 119 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 RNU6-876P-201ENST00000391295 104 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1□□□□□ -2.25
TM9SF3Q9HD45 RPL23AP50-201ENST00000434149 455 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 STAG3L5P-204ENST00000443759 179 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 MRPS10P1-201ENST00000448483 130 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 SNORA31.4-201ENST00000516049 129 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 RNU7-99P-201ENST00000516271 62 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1□□□□□ -2.25
TM9SF3Q9HD45 AC090617.3-201ENST00000573670 475 ntBASIC1□□□□□ -2.25
TM9SF3Q9HD45 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1□□□□□ -2.25
TM9SF3Q9HD45 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms