Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MTND4P7-201ENST00000523876 130 ntBASIC-0.32□□□□□ -2.46
CCDC42Q96M95 AP003461.1-201ENST00000528866 78 ntBASIC-0.32□□□□□ -2.46
CCDC42Q96M95 AL157687.1-201ENST00000554853 619 ntBASIC-0.32□□□□□ -2.46
CCDC42Q96M95 MIR4804-201ENST00000581683 73 ntBASIC-0.32□□□□□ -2.46
CCDC42Q96M95 AC012433.1-201ENST00000588916 398 ntBASIC-0.32□□□□□ -2.46
CCDC42Q96M95 MIR8087-201ENST00000612745 78 ntBASIC-0.32□□□□□ -2.46
CCDC42Q96M95 AC016597.2-201ENST00000613256 341 ntBASIC-0.32□□□□□ -2.46
CCDC42Q96M95 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.33□□□□□ -2.46
CCDC42Q96M95 MIR377-201ENST00000362145 69 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 Y_RNA.179-201ENST00000363844 90 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 RNU6-934P-201ENST00000365154 107 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 RNU6-396P-201ENST00000365369 105 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 MTCYBP4-201ENST00000401524 249 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 SNORD100-201ENST00000408573 76 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 RNU2-9P-201ENST00000410194 145 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 Z99497.1-201ENST00000421282 135 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 AC133104.1-201ENST00000429100 218 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 MTND1P26-201ENST00000440488 538 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.33□□□□□ -2.46
CCDC42Q96M95 AL355375.2-201ENST00000574825 175 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 MIR3678-201ENST00000578455 94 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 AL391834.2-201ENST00000609982 546 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 AC010608.3-201ENST00000625048 527 ntBASIC-0.33□□□□□ -2.46
CCDC42Q96M95 SNORA9.1-201ENST00000362412 131 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 Y_RNA.796-201ENST00000364268 102 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 Y_RNA.799-201ENST00000364992 102 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 Y_RNA.508-201ENST00000384502 114 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 RNU6-159P-201ENST00000391080 106 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-0.34□□□□□ -2.46
CCDC42Q96M95 MTCO2P11-201ENST00000431069 680 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AL353997.1-201ENST00000432936 108 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 MTND4P32-201ENST00000437189 1237 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AL033528.1-201ENST00000453780 140 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 snoU13.21-201ENST00000459368 105 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 MTCO3P38-201ENST00000468910 766 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 MTCO1P29-201ENST00000496868 288 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-0.34□□□□□ -2.46
CCDC42Q96M95 MTND1P8-201ENST00000571424 950 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 CLPTM1LP1-201ENST00000604519 484 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AF250324.2-201ENST00000608299 610 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AC090517.2-201ENST00000614966 680 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AC006504.8-201ENST00000621046 635 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 AC127459.3-201ENST00000624328 466 ntBASIC-0.34□□□□□ -2.46
CCDC42Q96M95 SNORD50.1-201ENST00000362987 71 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 RNU6-181P-201ENST00000363225 107 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 RNU2-59P-201ENST00000410482 191 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 Z82188.1-201ENST00000436709 154 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 AC079354.2-201ENST00000453523 154 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 RNU7-56P-201ENST00000458744 62 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.35□□□□□ -2.47
CCDC42Q96M95 RNU6-189P-201ENST00000516120 101 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 RNU6-445P-201ENST00000516949 107 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 RPL23AP91-201ENST00000569211 455 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 PIGPP4-201ENST00000584447 307 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 AC022306.3-201ENST00000619930 550 ntBASIC-0.35□□□□□ -2.47
CCDC42Q96M95 RNU6-933P-201ENST00000384424 107 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 MIR610-201ENST00000385139 96 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 MIR644A-201ENST00000385262 94 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 MT-TN-201ENST00000387400 73 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-0.36□□□□□ -2.47
CCDC42Q96M95 SNORA40.3-201ENST00000390964 122 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 AL590002.1-201ENST00000406554 418 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 MIR1197-201ENST00000408818 88 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.36□□□□□ -2.47
CCDC42Q96M95 RNU6-107P-201ENST00000516643 102 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 AL136370.1-201ENST00000608166 691 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 AL158063.1-201ENST00000615349 536 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 AL591926.4-201ENST00000616895 298 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 AC103705.1-201ENST00000619013 241 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 AC009248.2-201ENST00000619826 254 ntBASIC-0.36□□□□□ -2.47
CCDC42Q96M95 RNU6-541P-201ENST00000384709 110 ntBASIC-0.37□□□□□ -2.47
CCDC42Q96M95 MTCYBP8-201ENST00000422855 651 ntBASIC-0.37□□□□□ -2.47
CCDC42Q96M95 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.37□□□□□ -2.47
CCDC42Q96M95 MIR4771-2-201ENST00000577758 74 ntBASIC-0.37□□□□□ -2.47
CCDC42Q96M95 MIR4771-1-201ENST00000582617 74 ntBASIC-0.37□□□□□ -2.47
CCDC42Q96M95 AC011458.1-201ENST00000604034 617 ntBASIC-0.37□□□□□ -2.47
CCDC42Q96M95 AC004223.4-201ENST00000612426 332 ntBASIC-0.37□□□□□ -2.47
CCDC42Q96M95 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC-0.37□□□□□ -2.47
CCDC42Q96M95 RNU6-1120P-201ENST00000362988 108 ntBASIC-0.38□□□□□ -2.47
CCDC42Q96M95 RNU6V-201ENST00000384105 107 ntBASIC-0.38□□□□□ -2.47
CCDC42Q96M95 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-0.38□□□□□ -2.47
CCDC42Q96M95 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-0.38□□□□□ -2.47
CCDC42Q96M95 UBL5P4-201ENST00000562584 236 ntBASIC-0.38□□□□□ -2.47
CCDC42Q96M95 MIR4676-201ENST00000583078 72 ntBASIC-0.38□□□□□ -2.47
CCDC42Q96M95 MIR4424-201ENST00000585257 86 ntBASIC-0.38□□□□□ -2.47
CCDC42Q96M95 5S_rRNA.13-201ENST00000622298 123 ntBASIC-0.38□□□□□ -2.47
CCDC42Q96M95 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.38□□□□□ -2.47
CCDC42Q96M95 RNU6-82P-201ENST00000363970 107 ntBASIC-0.39□□□□□ -2.47
CCDC42Q96M95 RNU6-716P-201ENST00000365621 103 ntBASIC-0.39□□□□□ -2.47
CCDC42Q96M95 AL390729.2-201ENST00000416137 156 ntBASIC-0.39□□□□□ -2.47
CCDC42Q96M95 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC42Q96M95 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC42Q96M95 MTND2P14-201ENST00000482139 351 ntBASIC-0.39□□□□□ -2.47
CCDC42Q96M95 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC-0.39□□□□□ -2.47
CCDC42Q96M95 SNORA18.6-201ENST00000516792 115 ntBASIC-0.39□□□□□ -2.47
CCDC42Q96M95 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC-0.39□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms