Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AC090617.3-201ENST00000573670 475 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 MIR4303-201ENST00000581299 66 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 MIR4781-201ENST00000585250 76 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 TCL6_2.1-201ENST00000615162 119 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AC133104.2-201ENST00000615272 193 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AC090971.5-201ENST00000621102 293 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AC134503.1-201ENST00000633048 54 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 ZNF209P-201ENST00000593450 2304 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1301P-201ENST00000362724 104 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-137P-201ENST00000363680 108 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU1-115P-201ENST00000365329 160 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 SNORA22B-201ENST00000383876 138 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 SNORA70.7-201ENST00000384159 133 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 MIR194-1-201ENST00000384892 85 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 MIR329-1-201ENST00000385028 80 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 MIR548P-201ENST00000408336 84 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-321P-201ENST00000410912 106 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1001P-201ENST00000411265 100 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 AC004965.1-201ENST00000413033 213 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RPL23AP50-201ENST00000434149 455 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 AC004386.2-201ENST00000441858 148 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU7-95P-201ENST00000459222 64 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.631-201ENST00000459607 101 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1170P-201ENST00000515974 106 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.706-201ENST00000516933 99 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU1-92P-201ENST00000517017 135 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1137P-201ENST00000517073 99 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 AP002001.1-203ENST00000534002 267 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 MIR3171-201ENST00000584270 74 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 AC092447.9-201ENST00000603395 144 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 AC040896.1-201ENST00000613819 479 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 MIR338-201ENST00000636369 67 ntBASIC1.31□□□□□ -2.2
ZNF540Q8NDQ6 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AL391987.6-201ENST00000305671 199 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1123P-201ENST00000362347 106 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-203P-201ENST00000384038 104 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-700P-201ENST00000391043 107 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 MIR320B2-201ENST00000408479 138 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 USP9YP16-201ENST00000430287 407 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC099799.1-201ENST00000439809 192 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC073910.1-201ENST00000445047 438 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC009237.7-201ENST00000447357 229 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 USP9YP23-201ENST00000455085 407 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 RN7SKP295-201ENST00000517264 153 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC024995.1-201ENST00000523014 93 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 MIR5695-201ENST00000579717 85 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 MIR5188-201ENST00000583467 113 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC022432.1-201ENST00000595739 310 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 MZT1P2-201ENST00000604387 248 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC137590.2-201ENST00000619709 240 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 AC008873.1-201ENST00000625051 138 ntBASIC1.3□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.28-201ENST00000362554 111 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 snoU2-30.2-201ENST00000362805 70 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.128-201ENST00000363391 112 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.326-201ENST00000365176 113 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.415-201ENST00000384012 112 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-245P-201ENST00000384020 107 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.445-201ENST00000384168 102 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1145P-201ENST00000384246 107 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 MIR513A1-201ENST00000385138 129 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 MIR1323-201ENST00000408090 73 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 SNRPGP13-201ENST00000442212 177 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 PGBD4P5-201ENST00000445958 426 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 RNU7-169P-201ENST00000459456 61 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 AC010469.2-201ENST00000496412 480 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 RNU7-40P-201ENST00000516397 64 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-344P-201ENST00000516635 111 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 RNA5SP54-201ENST00000516951 92 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-264P-201ENST00000517134 104 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 SNORD116.3-201ENST00000517176 78 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 AC093023.1-201ENST00000547375 507 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 AL512310.8-201ENST00000550183 120 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 AL606534.2-204ENST00000635008 178 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 AC099654.10-201ENST00000640395 161 ntBASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
ZNF540Q8NDQ6 SNORA7.1-201ENST00000363750 139 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 SNORD87-201ENST00000364849 89 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.314-201ENST00000365114 102 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.428-201ENST00000384078 102 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 MIR625-201ENST00000385047 85 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 ELOCP21-201ENST00000412558 336 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 AL354695.1-201ENST00000427935 228 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 AL160004.2-201ENST00000432935 350 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 RNU7-87P-201ENST00000459343 62 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 RNU7-34P-201ENST00000459394 64 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms