Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL450270.1-201ENST00000606160 391 ntBASIC-1.64□□□□□ -2.67
LINC00643Q86TS7 AC022306.2-201ENST00000617563 647 ntBASIC-1.64□□□□□ -2.67
LINC00643Q86TS7 AC091948.2-201ENST00000636510 279 ntBASIC-1.64□□□□□ -2.67
LINC00643Q86TS7 RNA5SP457-201ENST00000363657 124 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 MIR204-201ENST00000385200 110 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 MIR1912-201ENST00000410389 80 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 NDUFA5P4-201ENST00000436704 385 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 RNU6-344P-201ENST00000516635 111 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 SNORA31.14-201ENST00000516728 116 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 AF250324.2-201ENST00000608299 610 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 AC023158.2-201ENST00000614876 543 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 AL445523.1-201ENST00000451184 1362 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 MTND4P9-201ENST00000507819 1346 ntBASIC-1.66□□□□□ -2.67
LINC00643Q86TS7 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.36-201ENST00000362602 112 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.122-201ENST00000363331 96 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 AL031274.1-201ENST00000450334 232 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 AC068587.4-201ENST00000533893 186 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 AL162376.1-201ENST00000624117 175 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.324-201ENST00000365165 102 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 MIR570-201ENST00000384917 97 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC092447.3-201ENST00000426027 686 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AL358934.1-201ENST00000432346 324 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 SNORD65B-201ENST00000459126 73 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 RPL23AP75-201ENST00000491601 451 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 RNU6-138P-201ENST00000515952 107 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC108676.2-201ENST00000605225 163 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC010205.1-201ENST00000616668 449 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 SNORA22B-201ENST00000383876 138 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 SNORA51.10-201ENST00000384418 136 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 AC091133.4-201ENST00000511142 308 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 IGKV1-22-201ENST00000524313 326 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 PCMTD1P2-201ENST00000565017 355 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 MTATP6P2-201ENST00000603319 678 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 RNU5A-5P-201ENST00000411054 116 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 EXOSC3P1-201ENST00000448649 500 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 snoU13.16-201ENST00000459350 104 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 RNU6-475P-201ENST00000516073 104 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 HIF1AP1-201ENST00000553642 175 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 AC108747.1-201ENST00000609508 535 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 AC005609.4-201ENST00000625071 447 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.148-201ENST00000363557 117 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 SNORA1-201ENST00000384107 130 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 RNU6-376P-201ENST00000384731 106 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 ZNF736P8Y-201ENST00000451913 669 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 AL138752.1-201ENST00000452964 351 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 AC091959.1-201ENST00000495857 238 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 SCARNA17-201ENST00000516183 144 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 AC005776.1-201ENST00000603164 290 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 AP001330.5-201ENST00000607176 411 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 MIR6740-201ENST00000618268 113 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 MTND1P7-201ENST00000632801 297 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.42-201ENST00000362660 108 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 RNA5SP257-201ENST00000363023 116 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MIR320B2-201ENST00000408479 138 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 RNU2-8P-201ENST00000410727 190 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MTCO3P42-201ENST00000509488 518 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MTCO3P39-201ENST00000514812 518 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 AL359999.1-201ENST00000604513 294 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MIR8066-201ENST00000617280 78 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MIR16-2-201ENST00000362117 81 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 MIR1287-201ENST00000408492 90 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 EPS15P1-201ENST00000448836 336 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 RNU6-274P-201ENST00000459566 107 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 SNORD11B-201ENST00000607707 90 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 ZNF299P-201ENST00000406845 1804 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC073343.1-201ENST00000328239 651 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 RNU6-116P-201ENST00000384042 109 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 MTCO2P8-201ENST00000412213 658 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC116353.2-201ENST00000505332 712 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC010598.1-201ENST00000510378 103 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 RNU7-51P-201ENST00000516560 62 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AL157687.1-201ENST00000554853 619 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AGGF1P4-201ENST00000568249 801 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 MIR4762-201ENST00000585261 75 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AP000811.1-201ENST00000603803 651 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC092574.1-201ENST00000609771 420 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 RNU6-490P-201ENST00000362985 107 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 SNORD95.1-201ENST00000364099 68 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 RNU6-1292P-201ENST00000383856 107 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 MIR518F-201ENST00000384973 87 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 RNU2-39P-201ENST00000410604 198 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 RNU6-758P-201ENST00000516292 89 ntBASIC-1.74□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms