Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL450270.1-201ENST00000606160 391 ntBASIC-1.64□□□□□ -2.67
LINC00643Q86TS7 AC022306.2-201ENST00000617563 647 ntBASIC-1.64□□□□□ -2.67
LINC00643Q86TS7 AC091948.2-201ENST00000636510 279 ntBASIC-1.64□□□□□ -2.67
LINC00643Q86TS7 RNA5SP457-201ENST00000363657 124 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 MIR204-201ENST00000385200 110 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 MIR1912-201ENST00000410389 80 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 NDUFA5P4-201ENST00000436704 385 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 RNU6-344P-201ENST00000516635 111 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 SNORA31.14-201ENST00000516728 116 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 AF250324.2-201ENST00000608299 610 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 AC023158.2-201ENST00000614876 543 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 AL445523.1-201ENST00000451184 1362 ntBASIC-1.65□□□□□ -2.67
LINC00643Q86TS7 MTND4P9-201ENST00000507819 1346 ntBASIC-1.66□□□□□ -2.67
LINC00643Q86TS7 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.36-201ENST00000362602 112 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.122-201ENST00000363331 96 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 AL031274.1-201ENST00000450334 232 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 AC068587.4-201ENST00000533893 186 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 AL162376.1-201ENST00000624117 175 ntBASIC-1.66□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.324-201ENST00000365165 102 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 MIR570-201ENST00000384917 97 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC092447.3-201ENST00000426027 686 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AL358934.1-201ENST00000432346 324 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 SNORD65B-201ENST00000459126 73 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 RPL23AP75-201ENST00000491601 451 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 RNU6-138P-201ENST00000515952 107 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC108676.2-201ENST00000605225 163 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 AC010205.1-201ENST00000616668 449 ntBASIC-1.67□□□□□ -2.68
LINC00643Q86TS7 SNORA22B-201ENST00000383876 138 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 SNORA51.10-201ENST00000384418 136 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 AC091133.4-201ENST00000511142 308 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 IGKV1-22-201ENST00000524313 326 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 PCMTD1P2-201ENST00000565017 355 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 MTATP6P2-201ENST00000603319 678 ntBASIC-1.68□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 RNU5A-5P-201ENST00000411054 116 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 EXOSC3P1-201ENST00000448649 500 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 snoU13.16-201ENST00000459350 104 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 RNU6-475P-201ENST00000516073 104 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 HIF1AP1-201ENST00000553642 175 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 AC108747.1-201ENST00000609508 535 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 AC005609.4-201ENST00000625071 447 ntBASIC-1.69□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.148-201ENST00000363557 117 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 SNORA1-201ENST00000384107 130 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 RNU6-376P-201ENST00000384731 106 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 ZNF736P8Y-201ENST00000451913 669 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 AL138752.1-201ENST00000452964 351 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 AC091959.1-201ENST00000495857 238 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 SCARNA17-201ENST00000516183 144 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 AC005776.1-201ENST00000603164 290 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 AP001330.5-201ENST00000607176 411 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 MIR6740-201ENST00000618268 113 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 MTND1P7-201ENST00000632801 297 ntBASIC-1.7□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.42-201ENST00000362660 108 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 RNA5SP257-201ENST00000363023 116 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MIR320B2-201ENST00000408479 138 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 RNU2-8P-201ENST00000410727 190 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MTCO3P42-201ENST00000509488 518 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MTCO3P39-201ENST00000514812 518 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 AL359999.1-201ENST00000604513 294 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MIR8066-201ENST00000617280 78 ntBASIC-1.71□□□□□ -2.68
LINC00643Q86TS7 MIR16-2-201ENST00000362117 81 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 MIR1287-201ENST00000408492 90 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 EPS15P1-201ENST00000448836 336 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 RNU6-274P-201ENST00000459566 107 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 SNORD11B-201ENST00000607707 90 ntBASIC-1.72□□□□□ -2.68
LINC00643Q86TS7 ZNF299P-201ENST00000406845 1804 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC073343.1-201ENST00000328239 651 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 RNU6-116P-201ENST00000384042 109 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 MTCO2P8-201ENST00000412213 658 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC116353.2-201ENST00000505332 712 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC010598.1-201ENST00000510378 103 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 RNU7-51P-201ENST00000516560 62 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AL157687.1-201ENST00000554853 619 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AGGF1P4-201ENST00000568249 801 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 MIR4762-201ENST00000585261 75 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AP000811.1-201ENST00000603803 651 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 AC092574.1-201ENST00000609771 420 ntBASIC-1.73□□□□□ -2.69
LINC00643Q86TS7 RNU6-490P-201ENST00000362985 107 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 SNORD95.1-201ENST00000364099 68 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 RNU6-1292P-201ENST00000383856 107 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 MIR518F-201ENST00000384973 87 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 RNU2-39P-201ENST00000410604 198 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 RNU6-758P-201ENST00000516292 89 ntBASIC-1.74□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms