Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR410-201ENST00000362222 80 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 SNORD114-16-201ENST00000363044 70 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 RNU4-73P-201ENST00000363164 141 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AL590002.1-201ENST00000406554 418 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 MIR1827-201ENST00000408549 66 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 MTCO3P19-201ENST00000415864 321 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 CYCSP46-201ENST00000423569 204 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 MTND3P16-201ENST00000452205 344 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 MTCO3P10-201ENST00000455912 772 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 CYCTP-201ENST00000504253 315 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC091885.1-201ENST00000506658 268 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC093303.1-201ENST00000514549 295 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 RNA5SP20-201ENST00000515976 84 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC023157.2-201ENST00000540596 141 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC022523.2-201ENST00000561045 150 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 MIR3913-1-201ENST00000577744 102 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 PIGPP4-201ENST00000584447 307 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AP001180.6-201ENST00000584918 159 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 MIR4424-201ENST00000585257 86 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 LARP7P1-201ENST00000605576 316 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC017083.3-201ENST00000609955 700 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AL136317.1-201ENST00000612653 226 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-1084P-201ENST00000362498 107 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 RNY4P3-201ENST00000365254 95 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-396P-201ENST00000365369 105 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 ZNF885P-201ENST00000420174 1098 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC079354.2-201ENST00000453523 154 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AP000870.1-201ENST00000472927 406 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC005178.1-201ENST00000508392 440 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC096720.1-201ENST00000604441 183 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 AC008536.2-201ENST00000607284 349 ntBASIC0.07□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-923P-201ENST00000364753 107 ntBASIC0.06□□□□□ -2.4
CCDC88AQ3V6T2 SNORA36.2-201ENST00000384004 127 ntBASIC0.06□□□□□ -2.4
CCDC88AQ3V6T2 Y_RNA.490-201ENST00000384413 102 ntBASIC0.06□□□□□ -2.4
CCDC88AQ3V6T2 CALM2P4-201ENST00000430810 426 ntBASIC0.06□□□□□ -2.4
CCDC88AQ3V6T2 AC107401.1-201ENST00000503426 685 ntBASIC0.06□□□□□ -2.4
CCDC88AQ3V6T2 MTATP6P9-201ENST00000515039 680 ntBASIC0.06□□□□□ -2.4
CCDC88AQ3V6T2 AC010999.1-201ENST00000611856 324 ntBASIC0.06□□□□□ -2.4
CCDC88AQ3V6T2 AP000568.1-201ENST00000282964 442 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 SNORD44.1-201ENST00000363202 61 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 SNORA25.3-201ENST00000363205 127 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 SNORD87-201ENST00000364849 89 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-580P-201ENST00000365159 107 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 MIR573-201ENST00000384964 99 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AL035398.1-201ENST00000430869 322 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AL359672.1-201ENST00000442302 409 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AL353572.1-201ENST00000442490 417 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 snoU13.6-201ENST00000458785 104 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 RNU7-172P-201ENST00000517125 64 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AC005828.6-201ENST00000606610 232 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 FER-210ENST00000628534 558 ntTSL 5 BASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 Y_RNA.151-201ENST00000363566 112 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-996P-201ENST00000365438 107 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 PIGPP3-201ENST00000425307 415 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 snoU13.21-201ENST00000459368 105 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AC141557.1-201ENST00000540982 400 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AK6P2-201ENST00000549020 471 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 RAC1P9-201ENST00000604990 392 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 AC073534.2-201ENST00000620377 381 ntBASIC0.05□□□□□ -2.4
CCDC88AQ3V6T2 MIR18A-201ENST00000362310 71 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 SNORA27.1-201ENST00000362604 124 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-1266P-201ENST00000362794 105 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-1322P-201ENST00000364309 107 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 SNORD114-9-201ENST00000364370 72 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 RNY3P9-201ENST00000384727 106 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 MIR520G-201ENST00000385064 90 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 RNA5SP219-201ENST00000390940 113 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 USMG5P1-201ENST00000425964 177 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 RPS3AP17-201ENST00000472594 777 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 RN7SKP164-201ENST00000516138 266 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 AC009094.1-201ENST00000564443 426 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 AC131055.1-201ENST00000584626 316 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 AL136370.1-201ENST00000608166 691 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 AC092634.7-201ENST00000621022 103 ntBASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-369P-201ENST00000362515 102 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 Y_RNA.123-201ENST00000363338 102 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 RNA5SP214-201ENST00000363378 118 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 SNORA72.1-201ENST00000363485 129 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-727P-201ENST00000363592 107 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 Y_RNA.185-201ENST00000363894 100 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 MIR1298-201ENST00000408783 112 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 RNA5SP222-201ENST00000411039 105 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 RNU5A-5P-201ENST00000411054 116 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 AC243428.1-201ENST00000421099 264 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 MTCO1P20-201ENST00000425366 358 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 SNORA25.12-201ENST00000516202 82 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-1291P-201ENST00000516591 104 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 SNORA74.3-201ENST00000517108 154 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 AL355375.2-201ENST00000574825 175 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 AC120024.3-201ENST00000603167 156 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 279 ms