Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-111P-201ENST00000517179 105 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 AC021269.2-201ENST00000532318 330 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 AL137100.2-201ENST00000555786 315 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 AC009127.3-201ENST00000570531 403 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 AC016717.2-201ENST00000609089 5141 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.122-201ENST00000363331 96 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 RNA5SP493-201ENST00000364115 91 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 RNU1-91P-201ENST00000364746 163 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.310-201ENST00000365063 113 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 RNU1-51P-201ENST00000365345 176 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-338P-201ENST00000383888 105 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.515-201ENST00000384535 112 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 SNORA3.2-201ENST00000408221 125 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 MIR1253-201ENST00000408273 105 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 MIR4643-201ENST00000577473 78 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 AC103810.6-201ENST00000606708 136 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 AC046143.2-201ENST00000609789 160 ntBASIC2.3□□□□□ -2.04
PTCHD3Q3KNS1 snoU2-30.2-201ENST00000362805 70 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.124-201ENST00000363339 93 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.341-201ENST00000365341 102 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-1289P-201ENST00000384431 106 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 MIR1261-201ENST00000408659 82 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 SNORD2.1-201ENST00000458762 69 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 COX6CP14-201ENST00000469580 174 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 MIR3169-201ENST00000578032 83 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 U6.73-201ENST00000619194 103 ntBASIC2.29□□□□□ -2.04
PTCHD3Q3KNS1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 RNU1-58P-201ENST00000362413 163 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-801P-201ENST00000364087 105 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 RNU1-96P-201ENST00000364163 162 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 SNORA70B-201ENST00000384210 135 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-662P-201ENST00000384253 104 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-855P-201ENST00000410395 104 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 Z98742.3-201ENST00000418637 326 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 HMGN2P34-201ENST00000437647 269 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 ATP5J2P3-201ENST00000451550 258 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 RPS27P22-201ENST00000478056 241 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 AL031274.2-201ENST00000599419 203 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 AC009779.6-201ENST00000603972 165 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 AC022202.1-201ENST00000613515 211 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 AC078938.1-201ENST00000620993 318 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 MIR338-201ENST00000636369 67 ntBASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
PTCHD3Q3KNS1 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.28□□□□□ -2.05
PTCHD3Q3KNS1 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 RNU6-1272P-201ENST00000362776 107 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 Y_RNA.65-201ENST00000362846 100 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 U8.2-201ENST00000363156 134 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 Y_RNA.287-201ENST00000364853 94 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 RNU6-407P-201ENST00000365280 104 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 MIR515-2-201ENST00000384883 83 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 MIR515-1-201ENST00000384884 83 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 MIR524-201ENST00000385242 87 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 Y_RNA.590-201ENST00000410140 107 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 Y_RNA.637-201ENST00000459424 114 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 HMGB3P3-201ENST00000510526 400 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 RNU6-1337P-201ENST00000516525 95 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 MIR4438-201ENST00000585271 93 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 AC073349.3-201ENST00000617616 186 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 snoU18.1-201ENST00000629629 71 ntBASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PTCHD3Q3KNS1 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AC007336.1-201ENST00000576365 3828 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 ZNF658B-202ENST00000615961 3375 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AP006437.1-201ENST00000641440 3685 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 RNU6-23P-201ENST00000363283 107 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 RNU1-22P-201ENST00000363334 158 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 Y_RNA.269-201ENST00000364685 89 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 RNU6-117P-201ENST00000365415 107 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 SNORA80E-201ENST00000384744 137 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 RNU11-5P-201ENST00000391216 129 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AL117342.1-201ENST00000404861 406 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 RNU2-14P-201ENST00000411053 191 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AL139156.1-201ENST00000412785 841 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 RPS15AP28-201ENST00000435088 386 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AC018634.1-201ENST00000437554 401 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AL135790.2-201ENST00000437701 267 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AC011753.1-201ENST00000451001 220 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 RPS20P10-201ENST00000451209 253 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 AL139109.1-201ENST00000455491 297 ntBASIC2.26□□□□□ -2.05
PTCHD3Q3KNS1 Y_RNA.638-201ENST00000459374 113 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms