Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC005178.1-201ENST00000508392 440 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MTATP6P9-201ENST00000515039 680 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-977P-201ENST00000516411 103 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 SNORA18.4-201ENST00000516440 124 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU2-56P-201ENST00000516826 190 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 SNORA18.7-201ENST00000516910 131 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC105029.1-201ENST00000520250 669 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC027419.1-201ENST00000522976 328 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MTND1P24-201ENST00000552175 861 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 AGGF1P4-201ENST00000568249 801 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MIR548AC-201ENST00000585049 88 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 BNIP3P40-201ENST00000596017 556 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC011458.1-201ENST00000604034 617 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC005828.6-201ENST00000606610 232 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC009994.1-201ENST00000606889 253 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AP002360.4-201ENST00000606980 481 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC064807.4-201ENST00000607201 407 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC064836.2-201ENST00000609491 462 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC124016.2-201ENST00000610058 665 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 DISC2.1-201ENST00000612827 205 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 SNORD38B-202ENST00000625943 69 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MIR499B-201ENST00000636498 73 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-227P-201ENST00000362865 103 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNA5SP275-201ENST00000363936 118 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-960P-201ENST00000364056 120 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU4-84P-201ENST00000364200 139 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNA5SP192-201ENST00000364404 120 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 Y_RNA.358-201ENST00000365491 99 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-815P-201ENST00000384080 113 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-1103P-201ENST00000384150 107 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 SNORD116-12-201ENST00000384468 92 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 MIR586-201ENST00000385035 97 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-127P-201ENST00000390897 107 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 MIR320C1-201ENST00000408566 88 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU4-30P-201ENST00000410245 143 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 SNORA40.8-201ENST00000411034 126 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-177P-201ENST00000411257 104 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-0.1□□□□□ -2.42
COL7A1Q02388 RPS3AP3-201ENST00000411933 242 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 USP9YP11-201ENST00000427537 717 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC-0.1□□□□□ -2.42
COL7A1Q02388 AL512286.1-201ENST00000439244 400 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC-0.1□□□□□ -2.42
COL7A1Q02388 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.1□□□□□ -2.42
COL7A1Q02388 RPS29P27-201ENST00000463711 170 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RPL39P38-201ENST00000467018 153 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 MTCO3P27-201ENST00000514397 196 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU7-12P-201ENST00000516030 62 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU7-99P-201ENST00000516271 62 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU7-43P-201ENST00000516554 64 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU7-51P-201ENST00000516560 62 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-856P-201ENST00000516959 98 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 RNU6-685P-201ENST00000517088 95 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC025647.1-201ENST00000517879 253 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC040926.1-201ENST00000530195 238 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC090517.1-201ENST00000569307 266 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 CPDP1-201ENST00000579660 283 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 SNORD92-201ENST00000585078 85 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 OR4H6P-202ENST00000603819 340 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AL158050.2-201ENST00000605336 568 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC022441.3-201ENST00000605737 136 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 MIR3666-201ENST00000607845 111 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC010205.1-201ENST00000616668 449 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 MIR6740-201ENST00000618268 113 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 FTX_2.1-201ENST00000618816 94 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AC009248.2-201ENST00000619826 254 ntBASIC-0.1□□□□□ -2.42
COL7A1Q02388 AL596211.1-201ENST00000569873 2277 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 RNU6-1123P-201ENST00000362347 106 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 SNORA27.1-201ENST00000362604 124 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 RNU6-727P-201ENST00000363592 107 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 Y_RNA.267-201ENST00000364679 109 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 RNA5SP517-201ENST00000364724 117 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 Y_RNA.533-201ENST00000384596 114 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 MIR1-2-201ENST00000384961 85 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 MIR522-201ENST00000385071 87 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 SNORD115.1-201ENST00000391109 76 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.1□□□□□ -2.43
COL7A1Q02388 MIR300-201ENST00000401138 83 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 MIR548L-201ENST00000408303 86 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 SNORD93-201ENST00000408813 74 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 RNU2-54P-201ENST00000410299 190 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 FABP5P4-201ENST00000437203 171 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 NFU1P2-201ENST00000448700 469 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-0.1□□□□□ -2.43
COL7A1Q02388 RNU7-102P-201ENST00000458948 62 ntBASIC-0.1□□□□□ -2.43
COL7A1Q02388 SCARNA18-201ENST00000459004 134 ntBASIC-0.1□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms