Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNU6-1286P-201ENST00000383871 107 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 RNU6-72P-201ENST00000384285 79 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 MIR10B-201ENST00000385011 110 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 RNU6-1168P-201ENST00000390831 104 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 RNU1-139P-201ENST00000391307 165 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 Y_RNA.590-201ENST00000410140 107 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 AL390729.2-201ENST00000416137 156 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 AC024067.1-201ENST00000426199 223 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.54□□□□□ -2.16
COL4A4P53420 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.54□□□□□ -2.16
COL4A4P53420 SNORD2.1-201ENST00000458762 69 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 HAR1A.1-201ENST00000459583 118 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 AP001025.1-201ENST00000486139 332 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.54□□□□□ -2.16
COL4A4P53420 LINC00933-203ENST00000559812 219 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 SCARNA4-201ENST00000629045 128 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 RNU6-1290P-201ENST00000362957 109 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RNU1-22P-201ENST00000363334 158 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 Y_RNA.136-201ENST00000363444 102 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 SNORD115-8-201ENST00000363856 82 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 Y_RNA.240-201ENST00000364469 95 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 SNORD115-38-201ENST00000365037 82 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RNU6-1175P-201ENST00000365200 107 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 Y_RNA.343-201ENST00000365354 112 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RNU6-20P-201ENST00000384106 107 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 Y_RNA.446-201ENST00000384178 104 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 Y_RNA.569-201ENST00000384749 103 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 MIR520E-201ENST00000384867 87 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 MIR153-2-201ENST00000385225 87 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 SNORA40.19-201ENST00000390846 128 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RNU2-51P-201ENST00000410708 197 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 TRAPPC2P4-201ENST00000421750 331 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 SNRPEP9-201ENST00000436794 238 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 HMGN2P18-201ENST00000450680 270 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RPL26P9-201ENST00000457466 433 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RNA5SP436-201ENST00000516020 115 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RNA5SP165-201ENST00000517142 115 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RNU6-711P-201ENST00000517255 106 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 AC016256.1-201ENST00000547971 354 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 RN7SL793P-201ENST00000583259 296 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.53□□□□□ -2.16
COL4A4P53420 AC090132.2-201ENST00000615881 347 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 AC073349.3-201ENST00000617616 186 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 AC024581.2-201ENST00000619986 252 ntBASIC1.53□□□□□ -2.16
COL4A4P53420 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.53□□□□□ -2.16
COL4A4P53420 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.53□□□□□ -2.16
COL4A4P53420 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL4A4P53420 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
COL4A4P53420 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.17
COL4A4P53420 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.17
COL4A4P53420 RNU6-78P-201ENST00000362897 107 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 RNU6-801P-201ENST00000364087 105 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 Y_RNA.304-201ENST00000365011 112 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 Y_RNA.400-201ENST00000383963 111 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 RNU6-142P-201ENST00000384019 107 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 Y_RNA.441-201ENST00000384123 112 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 RNU6-217P-201ENST00000384164 104 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 SNORD116-20-201ENST00000384529 92 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 MIR544A-201ENST00000384855 91 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 MIR518D-201ENST00000385014 87 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 Y_RNA.580-201ENST00000391004 95 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 RNU6-1197P-201ENST00000391183 107 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 FTH1P15-201ENST00000406984 280 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 AC098614.2-201ENST00000426040 255 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 AC079780.1-201ENST00000428259 207 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 POLR2KP2-201ENST00000438155 177 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 Z82210.1-201ENST00000440037 231 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 TMSB4XP3-201ENST00000445144 114 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.52□□□□□ -2.17
COL4A4P53420 RPL26P26-201ENST00000480251 434 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 AL049874.1-201ENST00000489560 388 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.52□□□□□ -2.17
COL4A4P53420 HMGB3P3-201ENST00000510526 400 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 SNORD116-28-201ENST00000516123 91 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 SNORA43.2-201ENST00000516652 128 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 RPL21P9-201ENST00000556149 474 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.52□□□□□ -2.17
COL4A4P53420 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.52□□□□□ -2.17
COL4A4P53420 AC037487.3-201ENST00000606668 112 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 AC104465.1-201ENST00000611365 139 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 AC027309.3-201ENST00000623419 351 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 snoU18.1-201ENST00000629629 71 ntBASIC1.52□□□□□ -2.17
COL4A4P53420 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.52□□□□□ -2.17
COL4A4P53420 MIR410-201ENST00000362222 80 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 Y_RNA.230-201ENST00000364348 109 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 Y_RNA.262-201ENST00000364641 102 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 Y_RNA.272-201ENST00000364696 102 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 RNU6-923P-201ENST00000364753 107 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 RNA5SP363-201ENST00000365072 115 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 Y_RNA.331-201ENST00000365267 102 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 RNU6-898P-201ENST00000365627 104 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 Y_RNA.418-201ENST00000384029 102 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 RNU6-140P-201ENST00000384566 108 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 RNU6-21P-201ENST00000384710 107 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 Y_RNA.570-201ENST00000384750 101 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 MIR329-1-201ENST00000385028 80 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 AL591034.1-201ENST00000407447 340 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 ELOCP21-201ENST00000412558 336 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 RPL23AP95-201ENST00000426806 265 ntBASIC1.51□□□□□ -2.17
COL4A4P53420 AF186996.7-201ENST00000492781 209 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms