Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL590004.2-201ENST00000404787 371 ntBASIC3.16□□□□□ -1.9
LIG3P49916 SNORD88.1-201ENST00000408684 91 ntBASIC3.16□□□□□ -1.9
LIG3P49916 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.16□□□□□ -1.9
LIG3P49916 UBL5P2-201ENST00000583788 219 ntBASIC3.16□□□□□ -1.9
LIG3P49916 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.16□□□□□ -1.9
LIG3P49916 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.16□□□□□ -1.9
LIG3P49916 AC012640.5-201ENST00000623897 319 ntBASIC3.16□□□□□ -1.9
LIG3P49916 MIR3658-201ENST00000636291 56 ntBASIC3.16□□□□□ -1.9
LIG3P49916 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.16□□□□□ -1.9
LIG3P49916 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
LIG3P49916 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
LIG3P49916 RNU6-1081P-201ENST00000384537 107 ntBASIC3.15□□□□□ -1.91
LIG3P49916 SNORA48.2-201ENST00000390926 124 ntBASIC3.15□□□□□ -1.91
LIG3P49916 SNORA79-201ENST00000408376 140 ntBASIC3.15□□□□□ -1.91
LIG3P49916 MIR1278-201ENST00000408753 81 ntBASIC3.15□□□□□ -1.91
LIG3P49916 RNU4-43P-201ENST00000410628 137 ntBASIC3.15□□□□□ -1.91
LIG3P49916 RPS4XP11-201ENST00000446897 772 ntBASIC3.15□□□□□ -1.91
LIG3P49916 AC011406.1-201ENST00000512440 370 ntBASIC3.15□□□□□ -1.91
LIG3P49916 RN7SKP282-201ENST00000516824 299 ntBASIC3.15□□□□□ -1.91
LIG3P49916 LARP7P3-201ENST00000579888 337 ntBASIC3.15□□□□□ -1.91
LIG3P49916 MIR2681-201ENST00000581814 105 ntBASIC3.15□□□□□ -1.91
LIG3P49916 AC005000.2-201ENST00000605468 310 ntBASIC3.15□□□□□ -1.91
LIG3P49916 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
LIG3P49916 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.14□□□□□ -1.91
LIG3P49916 snoU2-30.2-201ENST00000362805 70 ntBASIC3.14□□□□□ -1.91
LIG3P49916 Y_RNA.99-201ENST00000363138 105 ntBASIC3.14□□□□□ -1.91
LIG3P49916 RNU6-1117P-201ENST00000384525 104 ntBASIC3.14□□□□□ -1.91
LIG3P49916 MIR128-1-201ENST00000384921 82 ntBASIC3.14□□□□□ -1.91
LIG3P49916 MIR627-201ENST00000384979 97 ntBASIC3.14□□□□□ -1.91
LIG3P49916 SNORD37.2-201ENST00000391075 66 ntBASIC3.14□□□□□ -1.91
LIG3P49916 Y_RNA.587-201ENST00000391210 103 ntBASIC3.14□□□□□ -1.91
LIG3P49916 RNU11-5P-201ENST00000391216 129 ntBASIC3.14□□□□□ -1.91
LIG3P49916 Y_RNA.622-201ENST00000411091 108 ntBASIC3.14□□□□□ -1.91
LIG3P49916 RPL30P13-201ENST00000418873 348 ntBASIC3.14□□□□□ -1.91
LIG3P49916 AL445687.1-201ENST00000439946 251 ntBASIC3.14□□□□□ -1.91
LIG3P49916 SNORA25.12-201ENST00000516202 82 ntBASIC3.14□□□□□ -1.91
LIG3P49916 AC007229.1-201ENST00000590455 412 ntBASIC3.14□□□□□ -1.91
LIG3P49916 AL929325.1-201ENST00000603096 117 ntBASIC3.14□□□□□ -1.91
LIG3P49916 AL021707.8-201ENST00000609428 183 ntBASIC3.14□□□□□ -1.91
LIG3P49916 U4atac.1-201ENST00000618345 95 ntBASIC3.14□□□□□ -1.91
LIG3P49916 AC009487.2-201ENST00000420969 6821 ntBASIC3.14□□□□□ -1.91
LIG3P49916 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LIG3P49916 MIR422A-201ENST00000362286 90 ntBASIC3.13□□□□□ -1.91
LIG3P49916 SNORD45.3-201ENST00000363836 72 ntBASIC3.13□□□□□ -1.91
LIG3P49916 Y_RNA.203-201ENST00000364106 102 ntBASIC3.13□□□□□ -1.91
LIG3P49916 Y_RNA.521-201ENST00000384560 114 ntBASIC3.13□□□□□ -1.91
LIG3P49916 RNU6-417P-201ENST00000384712 107 ntBASIC3.13□□□□□ -1.91
LIG3P49916 SNORD15B-201ENST00000384714 146 ntBASIC3.13□□□□□ -1.91
LIG3P49916 AC009238.1-201ENST00000442165 424 ntBASIC3.13□□□□□ -1.91
LIG3P49916 AC009237.6-201ENST00000446969 424 ntBASIC3.13□□□□□ -1.91
LIG3P49916 AC023449.1-201ENST00000454464 154 ntBASIC3.13□□□□□ -1.91
LIG3P49916 AC011604.1-201ENST00000545978 196 ntBASIC3.13□□□□□ -1.91
LIG3P49916 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.13□□□□□ -1.91
LIG3P49916 MIR4325-201ENST00000583049 90 ntBASIC3.13□□□□□ -1.91
LIG3P49916 AL162274.2-201ENST00000614406 332 ntBASIC3.13□□□□□ -1.91
LIG3P49916 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.13□□□□□ -1.91
LIG3P49916 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
LIG3P49916 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
LIG3P49916 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.12□□□□□ -1.91
LIG3P49916 MIR520G-201ENST00000385064 90 ntBASIC3.12□□□□□ -1.91
LIG3P49916 RNU6-1186P-201ENST00000410429 97 ntBASIC3.12□□□□□ -1.91
LIG3P49916 RN7SKP220-201ENST00000410611 288 ntBASIC3.12□□□□□ -1.91
LIG3P49916 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.12□□□□□ -1.91
LIG3P49916 RPS15AP28-201ENST00000435088 386 ntBASIC3.12□□□□□ -1.91
LIG3P49916 AL353689.1-201ENST00000438895 199 ntBASIC3.12□□□□□ -1.91
LIG3P49916 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.12□□□□□ -1.91
LIG3P49916 RPS27P1-201ENST00000450552 247 ntBASIC3.12□□□□□ -1.91
LIG3P49916 RNA5SP341-201ENST00000516261 117 ntBASIC3.12□□□□□ -1.91
LIG3P49916 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.12□□□□□ -1.91
LIG3P49916 NDUFA5P6-201ENST00000542110 379 ntBASIC3.12□□□□□ -1.91
LIG3P49916 AC112693.2-201ENST00000556538 232 ntBASIC3.12□□□□□ -1.91
LIG3P49916 MIR3646-201ENST00000578301 84 ntBASIC3.12□□□□□ -1.91
LIG3P49916 AC073413.2-201ENST00000604332 360 ntBASIC3.12□□□□□ -1.91
LIG3P49916 MIR622-201ENST00000638396 96 ntBASIC3.12□□□□□ -1.91
LIG3P49916 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
LIG3P49916 AC010332.2-201ENST00000613083 1904 ntBASIC3.11□□□□□ -1.91
LIG3P49916 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
LIG3P49916 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LIG3P49916 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LIG3P49916 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LIG3P49916 RNU6-525P-201ENST00000363685 104 ntBASIC3.11□□□□□ -1.91
LIG3P49916 RNU1-96P-201ENST00000364163 162 ntBASIC3.11□□□□□ -1.91
LIG3P49916 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
LIG3P49916 Y_RNA.586-201ENST00000391146 98 ntBASIC3.11□□□□□ -1.91
LIG3P49916 RNU2-55P-201ENST00000411146 174 ntBASIC3.11□□□□□ -1.91
LIG3P49916 Z92545.1-201ENST00000411782 234 ntBASIC3.11□□□□□ -1.91
LIG3P49916 AC063976.3-201ENST00000426849 329 ntBASIC3.11□□□□□ -1.91
LIG3P49916 AC245102.2-201ENST00000448956 180 ntBASIC3.11□□□□□ -1.91
LIG3P49916 AC008885.1-201ENST00000514930 301 ntBASIC3.11□□□□□ -1.91
LIG3P49916 AL049861.1-201ENST00000603130 150 ntBASIC3.11□□□□□ -1.91
LIG3P49916 AL353149.1-201ENST00000610667 244 ntBASIC3.11□□□□□ -1.91
LIG3P49916 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
LIG3P49916 Y_RNA.393-201ENST00000383936 102 ntBASIC3.1□□□□□ -1.91
LIG3P49916 RNU6-1080P-201ENST00000383982 107 ntBASIC3.1□□□□□ -1.91
LIG3P49916 RNU6-959P-201ENST00000384671 107 ntBASIC3.1□□□□□ -1.91
LIG3P49916 RNU6-257P-201ENST00000410238 98 ntBASIC3.1□□□□□ -1.91
LIG3P49916 RPS29P6-201ENST00000438196 145 ntBASIC3.1□□□□□ -1.91
LIG3P49916 SNRPGP8-201ENST00000454064 226 ntBASIC3.1□□□□□ -1.91
LIG3P49916 RNU6-1041P-201ENST00000516254 102 ntBASIC3.1□□□□□ -1.91
LIG3P49916 RNU6-1096P-201ENST00000517089 102 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms