Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 STAG3L5P-204ENST00000443759 179 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 AL157398.1-201ENST00000452981 186 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 TPT1P7-201ENST00000458300 517 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.47□□□□□ -2.33
COL18A1P39060 RNU7-187P-201ENST00000458985 68 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 RNU7-21P-201ENST00000459430 62 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 AC083904.1-201ENST00000487828 231 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.47□□□□□ -2.33
COL18A1P39060 RNU7-175P-201ENST00000515915 61 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 RNU6-341P-201ENST00000516973 96 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 AC023157.2-201ENST00000540596 141 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 AK6P2-201ENST00000549020 471 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 AL158211.1-201ENST00000566763 763 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 PIGPP4-201ENST00000584447 307 ntBASIC0.47□□□□□ -2.33
COL18A1P39060 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.47□□□□□ -2.33
COL18A1P39060 RNU6-1085P-201ENST00000363576 107 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 Y_RNA.415-201ENST00000384012 112 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 RNU6-159P-201ENST00000391080 106 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 ERLEC1P1-201ENST00000433806 578 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.46□□□□□ -2.34
COL18A1P39060 RNU7-172P-201ENST00000517125 64 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 MIR5696-201ENST00000578474 85 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 MIR3684-201ENST00000579779 74 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 AC025627.3-201ENST00000582078 182 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 AC080078.2-201ENST00000603766 501 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 AC019193.3-201ENST00000609144 554 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 AC010999.1-201ENST00000611856 324 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 AC078883.4-201ENST00000623218 367 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 MIR6079-201ENST00000635807 62 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 AC099654.12-201ENST00000639868 649 ntBASIC0.46□□□□□ -2.34
COL18A1P39060 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.45□□□□□ -2.34
COL18A1P39060 RNU6-969P-201ENST00000383900 105 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 RPS3AP1-201ENST00000413190 320 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.45□□□□□ -2.34
COL18A1P39060 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.45□□□□□ -2.34
COL18A1P39060 AL049830.1-201ENST00000468034 425 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 RNU6-917P-201ENST00000516294 104 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 RNU2-56P-201ENST00000516826 190 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.45□□□□□ -2.34
COL18A1P39060 AC027288.2-201ENST00000553028 243 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 MTND1P15-201ENST00000579262 949 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 AC091178.2-201ENST00000584401 117 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 AC124864.2-201ENST00000624736 186 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 RNA5SP361-201ENST00000362686 118 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 Y_RNA.409-201ENST00000383990 98 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 SNORD41-201ENST00000386967 70 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 SNORA12.1-201ENST00000390873 148 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.45□□□□□ -2.34
COL18A1P39060 RPEP5-201ENST00000441137 268 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 MRPS10P1-201ENST00000448483 130 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 AC093850.1-201ENST00000454121 251 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 AC093303.1-201ENST00000514549 295 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 RNU6-107P-201ENST00000516643 102 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 AC027419.1-201ENST00000522976 328 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.45□□□□□ -2.34
COL18A1P39060 MIR6863-201ENST00000636112 90 ntBASIC0.45□□□□□ -2.34
COL18A1P39060 RNU6-833P-201ENST00000363486 107 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 Y_RNA.267-201ENST00000364679 109 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 RNU4-20P-201ENST00000365601 151 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 SNORD116-13-201ENST00000384408 92 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 MIR10B-201ENST00000385011 110 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 MIR891A-201ENST00000401237 79 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 RNU6-648P-201ENST00000410190 107 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 RPL30P16-201ENST00000419341 429 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 CALM2P4-201ENST00000430810 426 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 DAP3P1-201ENST00000441522 278 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 AC093019.1-201ENST00000443135 252 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.44□□□□□ -2.34
COL18A1P39060 U7.7-201ENST00000459276 60 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 OR9P1P-201ENST00000496431 281 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 AC113410.1-201ENST00000505029 247 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 AC097462.1-201ENST00000514125 324 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 AP002004.2-201ENST00000531656 154 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 UBL5P4-201ENST00000562584 236 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 AC092954.2-201ENST00000609103 430 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 AC097520.1-201ENST00000624435 385 ntBASIC0.44□□□□□ -2.34
COL18A1P39060 Y_RNA.231-201ENST00000364358 102 ntBASIC0.43□□□□□ -2.34
COL18A1P39060 ZNF885P-201ENST00000420174 1098 ntBASIC0.43□□□□□ -2.34
COL18A1P39060 MTND1P11-201ENST00000456661 876 ntBASIC0.43□□□□□ -2.34
COL18A1P39060 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.43□□□□□ -2.34
COL18A1P39060 RNA5SP20-201ENST00000515976 84 ntBASIC0.43□□□□□ -2.34
COL18A1P39060 ZNF519P2-201ENST00000557032 169 ntBASIC0.43□□□□□ -2.34
COL18A1P39060 AC006362.1-201ENST00000567392 174 ntBASIC0.43□□□□□ -2.34
COL18A1P39060 MIR4273-201ENST00000582824 84 ntBASIC0.43□□□□□ -2.34
COL18A1P39060 AC104465.1-201ENST00000611365 139 ntBASIC0.43□□□□□ -2.34
COL18A1P39060 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
COL18A1P39060 RNU4-12P-201ENST00000365233 139 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 Y_RNA.553-201ENST00000384670 102 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 MIR517A-201ENST00000385001 87 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 MIR514A2-201ENST00000385131 88 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 MIR514A3-201ENST00000385132 88 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.42□□□□□ -2.34
COL18A1P39060 Z95118.1-201ENST00000421372 247 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 USMG5P1-201ENST00000425964 177 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 MTCO1P19-201ENST00000443487 500 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 AC091179.3-201ENST00000474761 144 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 AC107401.1-201ENST00000503426 685 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.42□□□□□ -2.34
COL18A1P39060 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms