Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RPL23AP36-201ENST00000413895 458 ntBASIC1.82□□□□□ -2.12
MSH3P20585 HMGN2P19-201ENST00000425149 265 ntBASIC1.82□□□□□ -2.12
MSH3P20585 MTND3P2-201ENST00000438452 342 ntBASIC1.82□□□□□ -2.12
MSH3P20585 AC003989.2-201ENST00000440224 169 ntBASIC1.82□□□□□ -2.12
MSH3P20585 AC005042.3-201ENST00000453230 174 ntBASIC1.82□□□□□ -2.12
MSH3P20585 RPL23AP3-201ENST00000453844 468 ntBASIC1.82□□□□□ -2.12
MSH3P20585 SNORD65B-201ENST00000459126 73 ntBASIC1.82□□□□□ -2.12
MSH3P20585 HMGN1P10-201ENST00000474557 553 ntBASIC1.82□□□□□ -2.12
MSH3P20585 AC011406.1-201ENST00000512440 370 ntBASIC1.82□□□□□ -2.12
MSH3P20585 MTCO2P24-201ENST00000515611 426 ntBASIC1.82□□□□□ -2.12
MSH3P20585 RNU6-496P-201ENST00000516145 99 ntBASIC1.82□□□□□ -2.12
MSH3P20585 SUMO2P18-201ENST00000518873 252 ntBASIC1.82□□□□□ -2.12
MSH3P20585 AP003733.2-201ENST00000529409 171 ntBASIC1.82□□□□□ -2.12
MSH3P20585 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.82□□□□□ -2.12
MSH3P20585 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.82□□□□□ -2.12
MSH3P20585 SNORD113-5-201ENST00000607261 78 ntBASIC1.82□□□□□ -2.12
MSH3P20585 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.82□□□□□ -2.12
MSH3P20585 AP006437.1-201ENST00000641440 3685 ntBASIC1.82□□□□□ -2.12
MSH3P20585 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
MSH3P20585 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
MSH3P20585 Y_RNA.47-201ENST00000362697 108 ntBASIC1.81□□□□□ -2.12
MSH3P20585 snoU2_19.2-201ENST00000363024 80 ntBASIC1.81□□□□□ -2.12
MSH3P20585 RNU6-23P-201ENST00000363283 107 ntBASIC1.81□□□□□ -2.12
MSH3P20585 SNORD113-8-201ENST00000363497 74 ntBASIC1.81□□□□□ -2.12
MSH3P20585 Y_RNA.149-201ENST00000363558 117 ntBASIC1.81□□□□□ -2.12
MSH3P20585 SNORD115-30-201ENST00000364117 82 ntBASIC1.81□□□□□ -2.12
MSH3P20585 Y_RNA.286-201ENST00000364813 102 ntBASIC1.81□□□□□ -2.12
MSH3P20585 Y_RNA.331-201ENST00000365267 102 ntBASIC1.81□□□□□ -2.12
MSH3P20585 Y_RNA.361-201ENST00000365515 120 ntBASIC1.81□□□□□ -2.12
MSH3P20585 Y_RNA.512-201ENST00000384518 102 ntBASIC1.81□□□□□ -2.12
MSH3P20585 MIR568-201ENST00000385036 95 ntBASIC1.81□□□□□ -2.12
MSH3P20585 Y_RNA.581-201ENST00000391017 97 ntBASIC1.81□□□□□ -2.12
MSH3P20585 AL355796.1-201ENST00000406706 323 ntBASIC1.81□□□□□ -2.12
MSH3P20585 RPL21P38-201ENST00000418090 167 ntBASIC1.81□□□□□ -2.12
MSH3P20585 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.81□□□□□ -2.12
MSH3P20585 RPL23AP42-201ENST00000471152 471 ntBASIC1.81□□□□□ -2.12
MSH3P20585 SEPT14P8-201ENST00000508026 178 ntBASIC1.81□□□□□ -2.12
MSH3P20585 AC010598.1-201ENST00000510378 103 ntBASIC1.81□□□□□ -2.12
MSH3P20585 RNU6-155P-201ENST00000516347 100 ntBASIC1.81□□□□□ -2.12
MSH3P20585 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.81□□□□□ -2.12
MSH3P20585 AC006380.1-201ENST00000603598 186 ntBASIC1.81□□□□□ -2.12
MSH3P20585 AC022513.1-201ENST00000624512 117 ntBASIC1.81□□□□□ -2.12
MSH3P20585 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
MSH3P20585 AL356292.1-201ENST00000283110 373 ntBASIC1.8□□□□□ -2.12
MSH3P20585 RNU6-1266P-201ENST00000362794 105 ntBASIC1.8□□□□□ -2.12
MSH3P20585 SNORA20B-201ENST00000384220 132 ntBASIC1.8□□□□□ -2.12
MSH3P20585 RNU6-102P-201ENST00000384485 104 ntBASIC1.8□□□□□ -2.12
MSH3P20585 MIR215-201ENST00000384858 110 ntBASIC1.8□□□□□ -2.12
MSH3P20585 RNU11-3P-201ENST00000391111 133 ntBASIC1.8□□□□□ -2.12
MSH3P20585 RNA5SP465-201ENST00000391195 109 ntBASIC1.8□□□□□ -2.12
MSH3P20585 AL117342.1-201ENST00000404861 406 ntBASIC1.8□□□□□ -2.12
MSH3P20585 Y_RNA.602-201ENST00000410535 92 ntBASIC1.8□□□□□ -2.12
MSH3P20585 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
MSH3P20585 MTCYBP9-201ENST00000431021 303 ntBASIC1.8□□□□□ -2.12
MSH3P20585 HMGN2P34-201ENST00000437647 269 ntBASIC1.8□□□□□ -2.12
MSH3P20585 SUMO1P2-201ENST00000452524 304 ntBASIC1.8□□□□□ -2.12
MSH3P20585 RNU6-436P-201ENST00000516171 114 ntBASIC1.8□□□□□ -2.12
MSH3P20585 RNU6-1041P-201ENST00000516254 102 ntBASIC1.8□□□□□ -2.12
MSH3P20585 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH3P20585 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH3P20585 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH3P20585 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.8□□□□□ -2.12
MSH3P20585 MIR4298-201ENST00000584380 73 ntBASIC1.8□□□□□ -2.12
MSH3P20585 AL353149.1-201ENST00000610667 244 ntBASIC1.8□□□□□ -2.12
MSH3P20585 MIR8062-201ENST00000621515 85 ntBASIC1.8□□□□□ -2.12
MSH3P20585 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
MSH3P20585 snoU2-30.2-201ENST00000362805 70 ntBASIC1.79□□□□□ -2.12
MSH3P20585 Y_RNA.287-201ENST00000364853 94 ntBASIC1.79□□□□□ -2.12
MSH3P20585 RNU6-21P-201ENST00000384710 107 ntBASIC1.79□□□□□ -2.12
MSH3P20585 MIR597-201ENST00000384968 97 ntBASIC1.79□□□□□ -2.12
MSH3P20585 U8.13-201ENST00000390842 128 ntBASIC1.79□□□□□ -2.12
MSH3P20585 MIR1289-2-201ENST00000408360 111 ntBASIC1.79□□□□□ -2.12
MSH3P20585 MTND2P29-201ENST00000438595 412 ntBASIC1.79□□□□□ -2.12
MSH3P20585 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.79□□□□□ -2.12
MSH3P20585 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.79□□□□□ -2.12
MSH3P20585 ATP5J2P3-201ENST00000451550 258 ntBASIC1.79□□□□□ -2.12
MSH3P20585 HSPE1P25-201ENST00000455484 251 ntBASIC1.79□□□□□ -2.12
MSH3P20585 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.79□□□□□ -2.12
MSH3P20585 RPL23AP63-201ENST00000498752 471 ntBASIC1.79□□□□□ -2.12
MSH3P20585 RNU6-295P-201ENST00000516901 104 ntBASIC1.79□□□□□ -2.12
MSH3P20585 AP005660.1-201ENST00000522972 293 ntBASIC1.79□□□□□ -2.12
MSH3P20585 MIR3122-201ENST00000577243 73 ntBASIC1.79□□□□□ -2.12
MSH3P20585 AC006435.5-201ENST00000624486 112 ntBASIC1.79□□□□□ -2.12
MSH3P20585 MIR338-201ENST00000636369 67 ntBASIC1.79□□□□□ -2.12
MSH3P20585 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
MSH3P20585 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
MSH3P20585 SNORD114-7-201ENST00000362520 77 ntBASIC1.78□□□□□ -2.12
MSH3P20585 SNORA27.1-201ENST00000362604 124 ntBASIC1.78□□□□□ -2.12
MSH3P20585 Y_RNA.84-201ENST00000363011 104 ntBASIC1.78□□□□□ -2.12
MSH3P20585 Y_RNA.376-201ENST00000365638 108 ntBASIC1.78□□□□□ -2.12
MSH3P20585 RNU6-713P-201ENST00000384761 107 ntBASIC1.78□□□□□ -2.12
MSH3P20585 AL031003.1-201ENST00000404229 172 ntBASIC1.78□□□□□ -2.12
MSH3P20585 AL158823.1-201ENST00000418441 478 ntBASIC1.78□□□□□ -2.12
MSH3P20585 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.78□□□□□ -2.12
MSH3P20585 AC099677.2-201ENST00000436385 175 ntBASIC1.78□□□□□ -2.12
MSH3P20585 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
MSH3P20585 RNU6-1146P-201ENST00000516282 102 ntBASIC1.78□□□□□ -2.12
MSH3P20585 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.78□□□□□ -2.12
MSH3P20585 AL161670.1-201ENST00000554348 137 ntBASIC1.78□□□□□ -2.12
MSH3P20585 MIR4299-201ENST00000577899 72 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms