Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SNORA40.6-201ENST00000391153 128 ntBASIC1.2□□□□□ -2.22
SDC1P18827 RNA5SP475-201ENST00000410568 110 ntBASIC1.2□□□□□ -2.22
SDC1P18827 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.2□□□□□ -2.22
SDC1P18827 RNU7-94P-201ENST00000459576 63 ntBASIC1.2□□□□□ -2.22
SDC1P18827 DNAJC19P9-201ENST00000555084 351 ntBASIC1.2□□□□□ -2.22
SDC1P18827 AC055872.1-201ENST00000570978 278 ntBASIC1.2□□□□□ -2.22
SDC1P18827 AL355375.2-201ENST00000574825 175 ntBASIC1.2□□□□□ -2.22
SDC1P18827 MIR3937-201ENST00000580135 106 ntBASIC1.2□□□□□ -2.22
SDC1P18827 AC025253.1-201ENST00000613623 543 ntBASIC1.2□□□□□ -2.22
SDC1P18827 AC040896.1-201ENST00000613819 479 ntBASIC1.2□□□□□ -2.22
SDC1P18827 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.2□□□□□ -2.22
SDC1P18827 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.19□□□□□ -2.22
SDC1P18827 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.19□□□□□ -2.22
SDC1P18827 Y_RNA.314-201ENST00000365114 102 ntBASIC1.19□□□□□ -2.22
SDC1P18827 RNA5SP259-201ENST00000365541 109 ntBASIC1.19□□□□□ -2.22
SDC1P18827 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.19□□□□□ -2.22
SDC1P18827 Y_RNA.384-201ENST00000383909 102 ntBASIC1.19□□□□□ -2.22
SDC1P18827 RNU6-1040P-201ENST00000383974 107 ntBASIC1.19□□□□□ -2.22
SDC1P18827 MIR873-201ENST00000401120 77 ntBASIC1.19□□□□□ -2.22
SDC1P18827 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.19□□□□□ -2.22
SDC1P18827 AL137792.2-201ENST00000443484 235 ntBASIC1.19□□□□□ -2.22
SDC1P18827 Y_RNA.632-201ENST00000459189 102 ntBASIC1.19□□□□□ -2.22
SDC1P18827 AC091021.1-201ENST00000468051 388 ntBASIC1.19□□□□□ -2.22
SDC1P18827 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.19□□□□□ -2.22
SDC1P18827 FGF7P4-201ENST00000509595 295 ntBASIC1.19□□□□□ -2.22
SDC1P18827 RNU6-507P-201ENST00000516045 100 ntBASIC1.19□□□□□ -2.22
SDC1P18827 RNU6-699P-201ENST00000517081 110 ntBASIC1.19□□□□□ -2.22
SDC1P18827 SUMO2P16-201ENST00000519475 264 ntBASIC1.19□□□□□ -2.22
SDC1P18827 AC144568.1-201ENST00000520139 137 ntBASIC1.19□□□□□ -2.22
SDC1P18827 AC023442.1-201ENST00000531247 422 ntBASIC1.19□□□□□ -2.22
SDC1P18827 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.19□□□□□ -2.22
SDC1P18827 MIR4524B-201ENST00000581569 115 ntBASIC1.19□□□□□ -2.22
SDC1P18827 AL021879.1-201ENST00000611756 288 ntBASIC1.19□□□□□ -2.22
SDC1P18827 AC084781.2-201ENST00000615568 161 ntBASIC1.19□□□□□ -2.22
SDC1P18827 AL078604.3-201ENST00000615580 211 ntBASIC1.19□□□□□ -2.22
SDC1P18827 AC138305.3-201ENST00000624988 240 ntBASIC1.19□□□□□ -2.22
SDC1P18827 SNORD33-201ENST00000362761 85 ntBASIC1.18□□□□□ -2.22
SDC1P18827 RNU6-490P-201ENST00000362985 107 ntBASIC1.18□□□□□ -2.22
SDC1P18827 Y_RNA.243-201ENST00000364481 109 ntBASIC1.18□□□□□ -2.22
SDC1P18827 SNORD26-201ENST00000384147 75 ntBASIC1.18□□□□□ -2.22
SDC1P18827 RNY3P4-201ENST00000384428 101 ntBASIC1.18□□□□□ -2.22
SDC1P18827 Y_RNA.529-201ENST00000384586 119 ntBASIC1.18□□□□□ -2.22
SDC1P18827 AL034345.1-201ENST00000407768 123 ntBASIC1.18□□□□□ -2.22
SDC1P18827 Y_RNA.605-201ENST00000410577 105 ntBASIC1.18□□□□□ -2.22
SDC1P18827 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.18□□□□□ -2.22
SDC1P18827 AC096644.2-201ENST00000429278 159 ntBASIC1.18□□□□□ -2.22
SDC1P18827 AL135790.2-201ENST00000437701 267 ntBASIC1.18□□□□□ -2.22
SDC1P18827 STAG3L5P-204ENST00000443759 179 ntBASIC1.18□□□□□ -2.22
SDC1P18827 PGBD4P5-201ENST00000445958 426 ntBASIC1.18□□□□□ -2.22
SDC1P18827 CHEK2P4-201ENST00000450340 246 ntBASIC1.18□□□□□ -2.22
SDC1P18827 RNU2-12P-201ENST00000517216 168 ntBASIC1.18□□□□□ -2.22
SDC1P18827 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.18□□□□□ -2.22
SDC1P18827 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.18□□□□□ -2.22
SDC1P18827 AC093027.1-201ENST00000546698 429 ntBASIC1.18□□□□□ -2.22
SDC1P18827 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.18□□□□□ -2.22
SDC1P18827 MIR4421-201ENST00000578133 69 ntBASIC1.18□□□□□ -2.22
SDC1P18827 AC091178.2-201ENST00000584401 117 ntBASIC1.18□□□□□ -2.22
SDC1P18827 PRR13P7-201ENST00000605538 430 ntBASIC1.18□□□□□ -2.22
SDC1P18827 U2.1-201ENST00000618978 145 ntBASIC1.18□□□□□ -2.22
SDC1P18827 AL121890.5-201ENST00000620848 304 ntBASIC1.18□□□□□ -2.22
SDC1P18827 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
SDC1P18827 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.18□□□□□ -2.22
SDC1P18827 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
SDC1P18827 Y_RNA.70-201ENST00000362886 110 ntBASIC1.17□□□□□ -2.22
SDC1P18827 RNA5SP99-201ENST00000364020 114 ntBASIC1.17□□□□□ -2.22
SDC1P18827 RNU6-117P-201ENST00000365415 107 ntBASIC1.17□□□□□ -2.22
SDC1P18827 Y_RNA.361-201ENST00000365515 120 ntBASIC1.17□□□□□ -2.22
SDC1P18827 RNU6-1310P-201ENST00000384153 107 ntBASIC1.17□□□□□ -2.22
SDC1P18827 RNU6-708P-201ENST00000384217 107 ntBASIC1.17□□□□□ -2.22
SDC1P18827 RNU6-376P-201ENST00000384731 106 ntBASIC1.17□□□□□ -2.22
SDC1P18827 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.17□□□□□ -2.22
SDC1P18827 RNU4-62P-201ENST00000410125 130 ntBASIC1.17□□□□□ -2.22
SDC1P18827 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC1P18827 AC093019.1-201ENST00000443135 252 ntBASIC1.17□□□□□ -2.22
SDC1P18827 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC1P18827 RNU7-152P-201ENST00000458982 64 ntBASIC1.17□□□□□ -2.22
SDC1P18827 RPL21P9-201ENST00000556149 474 ntBASIC1.17□□□□□ -2.22
SDC1P18827 MIR548S-201ENST00000581352 82 ntBASIC1.17□□□□□ -2.22
SDC1P18827 AC011476.5-201ENST00000615594 130 ntBASIC1.17□□□□□ -2.22
SDC1P18827 AC004467.1-201ENST00000615678 330 ntBASIC1.17□□□□□ -2.22
SDC1P18827 Y_RNA.101-201ENST00000363154 102 ntBASIC1.16□□□□□ -2.22
SDC1P18827 SNORD115-30-201ENST00000364117 82 ntBASIC1.16□□□□□ -2.22
SDC1P18827 Y_RNA.263-201ENST00000364659 114 ntBASIC1.16□□□□□ -2.22
SDC1P18827 Y_RNA.267-201ENST00000364679 109 ntBASIC1.16□□□□□ -2.22
SDC1P18827 Y_RNA.463-201ENST00000384271 102 ntBASIC1.16□□□□□ -2.22
SDC1P18827 RNY3P14-201ENST00000384309 102 ntBASIC1.16□□□□□ -2.22
SDC1P18827 RNU6-1009P-201ENST00000390996 107 ntBASIC1.16□□□□□ -2.22
SDC1P18827 RPL30P13-201ENST00000418873 348 ntBASIC1.16□□□□□ -2.22
SDC1P18827 SNX2P2-201ENST00000424553 323 ntBASIC1.16□□□□□ -2.22
SDC1P18827 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.16□□□□□ -2.22
SDC1P18827 AC099799.1-201ENST00000439809 192 ntBASIC1.16□□□□□ -2.22
SDC1P18827 FCF1P4-201ENST00000448326 183 ntBASIC1.16□□□□□ -2.22
SDC1P18827 MTND5P20-201ENST00000448677 143 ntBASIC1.16□□□□□ -2.22
SDC1P18827 SNORD19B-201ENST00000459623 84 ntBASIC1.16□□□□□ -2.22
SDC1P18827 RNU6-1012P-201ENST00000516606 109 ntBASIC1.16□□□□□ -2.22
SDC1P18827 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.16□□□□□ -2.22
SDC1P18827 AL512598.1-201ENST00000610158 273 ntBASIC1.16□□□□□ -2.22
SDC1P18827 AC073349.3-201ENST00000617616 186 ntBASIC1.16□□□□□ -2.22
SDC1P18827 AL513423.1-201ENST00000621695 132 ntBASIC1.16□□□□□ -2.22
SDC1P18827 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms