Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 Y_RNA.43-201ENST00000362670 111 ntBASIC3.35□□□□□ -1.87
SOX1O00570 RNU1-22P-201ENST00000363334 158 ntBASIC3.35□□□□□ -1.87
SOX1O00570 SNORA3.2-201ENST00000408221 125 ntBASIC3.35□□□□□ -1.87
SOX1O00570 HMGN2P18-201ENST00000450680 270 ntBASIC3.35□□□□□ -1.87
SOX1O00570 RNU6-1061P-201ENST00000516530 99 ntBASIC3.35□□□□□ -1.87
SOX1O00570 AC026333.2-201ENST00000542164 106 ntBASIC3.35□□□□□ -1.87
SOX1O00570 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.35□□□□□ -1.87
SOX1O00570 DEFB122-202ENST00000569013 197 ntBASIC3.35□□□□□ -1.87
SOX1O00570 MIR4474-201ENST00000579189 78 ntBASIC3.35□□□□□ -1.87
SOX1O00570 AL670379.3-201ENST00000605040 251 ntBASIC3.35□□□□□ -1.87
SOX1O00570 UCA1.1-201ENST00000620952 75 ntBASIC3.35□□□□□ -1.87
SOX1O00570 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SOX1O00570 AC091564.4-201ENST00000533934 2194 ntBASIC3.35□□□□□ -1.87
SOX1O00570 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
SOX1O00570 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SOX1O00570 RNU1-72P-201ENST00000362976 153 ntBASIC3.34□□□□□ -1.87
SOX1O00570 RNU6-647P-201ENST00000364243 107 ntBASIC3.34□□□□□ -1.87
SOX1O00570 Y_RNA.226-201ENST00000364337 114 ntBASIC3.34□□□□□ -1.87
SOX1O00570 MIR184-201ENST00000384962 84 ntBASIC3.34□□□□□ -1.87
SOX1O00570 RPS4XP11-201ENST00000446897 772 ntBASIC3.34□□□□□ -1.87
SOX1O00570 SNORD109B-201ENST00000458961 67 ntBASIC3.34□□□□□ -1.87
SOX1O00570 SNORD11-201ENST00000459124 84 ntBASIC3.34□□□□□ -1.87
SOX1O00570 SNORD109A-201ENST00000459128 67 ntBASIC3.34□□□□□ -1.87
SOX1O00570 RPS29P21-201ENST00000496272 170 ntBASIC3.34□□□□□ -1.87
SOX1O00570 AC097462.1-201ENST00000514125 324 ntBASIC3.34□□□□□ -1.87
SOX1O00570 Y_RNA.690-201ENST00000516603 95 ntBASIC3.34□□□□□ -1.87
SOX1O00570 MIR2114-201ENST00000516645 80 ntBASIC3.34□□□□□ -1.87
SOX1O00570 RNU7-172P-201ENST00000517125 64 ntBASIC3.34□□□□□ -1.87
SOX1O00570 MIR3613-201ENST00000579844 87 ntBASIC3.34□□□□□ -1.87
SOX1O00570 AC105245.1-201ENST00000581934 244 ntBASIC3.34□□□□□ -1.87
SOX1O00570 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.34□□□□□ -1.87
SOX1O00570 Pinc.1-201ENST00000616452 154 ntBASIC3.34□□□□□ -1.87
SOX1O00570 MIR622-201ENST00000638396 96 ntBASIC3.34□□□□□ -1.87
SOX1O00570 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SOX1O00570 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
SOX1O00570 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.33□□□□□ -1.88
SOX1O00570 Y_RNA.91-201ENST00000363042 107 ntBASIC3.33□□□□□ -1.88
SOX1O00570 RNU6-1209P-201ENST00000363655 107 ntBASIC3.33□□□□□ -1.88
SOX1O00570 Y_RNA.796-201ENST00000364268 102 ntBASIC3.33□□□□□ -1.88
SOX1O00570 Y_RNA.799-201ENST00000364992 102 ntBASIC3.33□□□□□ -1.88
SOX1O00570 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SOX1O00570 MIR1289-2-201ENST00000408360 111 ntBASIC3.33□□□□□ -1.88
SOX1O00570 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.33□□□□□ -1.88
SOX1O00570 MICF-203ENST00000432679 129 ntBASIC3.33□□□□□ -1.88
SOX1O00570 RNU6-711P-201ENST00000517255 106 ntBASIC3.33□□□□□ -1.88
SOX1O00570 AC011604.1-201ENST00000545978 196 ntBASIC3.33□□□□□ -1.88
SOX1O00570 MIR4662B-201ENST00000579498 81 ntBASIC3.33□□□□□ -1.88
SOX1O00570 MIR3117-201ENST00000584034 78 ntBASIC3.33□□□□□ -1.88
SOX1O00570 MIR4438-201ENST00000585271 93 ntBASIC3.33□□□□□ -1.88
SOX1O00570 AC090115.4-201ENST00000609970 188 ntBASIC3.33□□□□□ -1.88
SOX1O00570 RMST_8.1-201ENST00000610287 165 ntBASIC3.33□□□□□ -1.88
SOX1O00570 MIR1248-201ENST00000629190 106 ntBASIC3.33□□□□□ -1.88
SOX1O00570 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SOX1O00570 MTND5P32-201ENST00000560711 1802 ntBASIC3.33□□□□□ -1.88
SOX1O00570 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.32□□□□□ -1.88
SOX1O00570 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SOX1O00570 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SOX1O00570 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SOX1O00570 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SOX1O00570 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SOX1O00570 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SOX1O00570 RNU6-1138P-201ENST00000365359 106 ntBASIC3.32□□□□□ -1.88
SOX1O00570 SNORA67.4-201ENST00000384688 142 ntBASIC3.32□□□□□ -1.88
SOX1O00570 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SOX1O00570 Y_RNA.630-201ENST00000411370 108 ntBASIC3.32□□□□□ -1.88
SOX1O00570 AC063976.4-201ENST00000421971 163 ntBASIC3.32□□□□□ -1.88
SOX1O00570 OR9P1P-201ENST00000496431 281 ntBASIC3.32□□□□□ -1.88
SOX1O00570 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.32□□□□□ -1.88
SOX1O00570 AC110079.1-202ENST00000635213 138 ntBASIC3.32□□□□□ -1.88
SOX1O00570 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SOX1O00570 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SOX1O00570 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SOX1O00570 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SOX1O00570 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.32□□□□□ -1.88
SOX1O00570 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
SOX1O00570 MIR22-201ENST00000362190 85 ntBASIC3.31□□□□□ -1.88
SOX1O00570 MIR562-201ENST00000384894 95 ntBASIC3.31□□□□□ -1.88
SOX1O00570 MIR548A3-201ENST00000385297 97 ntBASIC3.31□□□□□ -1.88
SOX1O00570 SNORD67-201ENST00000390833 111 ntBASIC3.31□□□□□ -1.88
SOX1O00570 U6atac.2-201ENST00000408644 118 ntBASIC3.31□□□□□ -1.88
SOX1O00570 Y_RNA.617-201ENST00000410920 90 ntBASIC3.31□□□□□ -1.88
SOX1O00570 RPS12P18-201ENST00000442381 270 ntBASIC3.31□□□□□ -1.88
SOX1O00570 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.31□□□□□ -1.88
SOX1O00570 SNORA18.4-201ENST00000516440 124 ntBASIC3.31□□□□□ -1.88
SOX1O00570 RNU6-965P-201ENST00000516721 96 ntBASIC3.31□□□□□ -1.88
SOX1O00570 RNU7-149P-201ENST00000516739 59 ntBASIC3.31□□□□□ -1.88
SOX1O00570 RNA5SP490-201ENST00000517141 136 ntBASIC3.31□□□□□ -1.88
SOX1O00570 RNA5SP170-201ENST00000517150 101 ntBASIC3.31□□□□□ -1.88
SOX1O00570 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.31□□□□□ -1.88
SOX1O00570 ZNF658B-202ENST00000615961 3375 ntBASIC3.31□□□□□ -1.88
SOX1O00570 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SOX1O00570 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
SOX1O00570 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
SOX1O00570 RNU6-309P-201ENST00000364573 106 ntBASIC3.3□□□□□ -1.88
SOX1O00570 SNORD58C-201ENST00000365223 64 ntBASIC3.3□□□□□ -1.88
SOX1O00570 RNU6-546P-201ENST00000383991 107 ntBASIC3.3□□□□□ -1.88
SOX1O00570 SNORD15B-201ENST00000384714 146 ntBASIC3.3□□□□□ -1.88
SOX1O00570 RNA5SP229-201ENST00000410809 99 ntBASIC3.3□□□□□ -1.88
SOX1O00570 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX1O00570 AC009969.1-201ENST00000438726 172 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms