Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PCDHB3Q9Y5E6 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
PCDHB3Q9Y5E6 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.99□□□□□ -1.77
PCDHB3Q9Y5E6 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 RNA5SP295-201ENST00000362655 121 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 RNU1-72P-201ENST00000362976 153 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 Y_RNA.96-201ENST00000363092 109 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 RNA5SP130-201ENST00000364431 114 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 RNU4-67P-201ENST00000364569 141 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 MIR200C-201ENST00000384980 68 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 MIR605-201ENST00000385078 83 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 RNA5SP38-201ENST00000410750 119 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 RPS29P19-201ENST00000479709 171 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 SNORA31.21-201ENST00000517180 77 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 MIR4778-201ENST00000577635 80 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 MIR3158-1-201ENST00000583596 81 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 AC002984.1-201ENST00000591692 448 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 AC012442.3-202ENST00000636742 206 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 LINC02471-203ENST00000641941 4752 ntBASIC3.98□□□□□ -1.77
PCDHB3Q9Y5E6 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AC093908.1-201ENST00000623125 8092 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 RNU6-442P-201ENST00000383968 104 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 Y_RNA.426-201ENST00000384068 113 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 SNORA18-201ENST00000384416 132 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 MIR670-201ENST00000390142 98 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AC060773.1-201ENST00000421698 310 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AL139247.1-201ENST00000422768 325 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AC244505.4-201ENST00000434905 287 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 SSXP5-201ENST00000443473 287 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 RNU7-80P-201ENST00000459562 61 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 RNU6-1018P-201ENST00000516577 106 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 SNORA18.7-201ENST00000516910 131 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AC020914.4-201ENST00000597690 277 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AL606490.9-201ENST00000603331 271 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AL049781.1-201ENST00000623195 3585 ntBASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.97□□□□□ -1.77
PCDHB3Q9Y5E6 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.77
PCDHB3Q9Y5E6 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 PWAR6-201ENST00000552334 4618 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 RNA5SP252-201ENST00000391131 119 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 CYCSP19-201ENST00000411715 316 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 SNRPGP14-201ENST00000435400 219 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 AL353813.1-201ENST00000440700 253 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 PPIAP15-201ENST00000479662 484 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 RPS23P4-201ENST00000487908 423 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 SNORA67.7-201ENST00000516664 135 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 AP003484.1-201ENST00000530974 250 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 AL513534.2-201ENST00000603836 250 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 OTUD4P1-201ENST00000237841 3067 ntBASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PCDHB3Q9Y5E6 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 RNU6-743P-201ENST00000364151 106 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 RNU6-268P-201ENST00000364174 107 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 SNORD45B-201ENST00000364617 72 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 Y_RNA.620-201ENST00000411009 88 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 RN7SL542P-201ENST00000467147 294 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 MIR7151-201ENST00000617477 60 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 AC064859.1-201ENST00000624741 174 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 AC095038.3-201ENST00000634439 195 ntBASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.95□□□□□ -1.78
PCDHB3Q9Y5E6 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 RNA5SP322-201ENST00000363617 119 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 SNORD14E-201ENST00000364009 85 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 RNU1-89P-201ENST00000384592 164 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 AL138878.1-201ENST00000405131 347 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 RPS29P7-201ENST00000439662 171 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 RPS12P18-201ENST00000442381 270 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 Y_RNA.705-201ENST00000516862 110 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 MIR4668-201ENST00000582284 70 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 AC078899.2-201ENST00000595282 212 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 AC008739.3-201ENST00000603262 127 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 141.4 ms