Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 Y_RNA.675-201ENST00000516389 149 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 SNORA31.10-201ENST00000516482 106 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 SNORA20.3-201ENST00000516880 132 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 RNU6-1213P-201ENST00000517075 94 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 RNU6-264P-201ENST00000517134 104 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AC018448.1-201ENST00000552843 316 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 MIR4303-201ENST00000581299 66 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AL357075.2-201ENST00000614906 189 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 MIR8054-201ENST00000620877 86 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AC099654.14-201ENST00000638599 341 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AC073544.1-201ENST00000600110 1595 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AL391987.6-201ENST00000305671 199 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 RNU6-1123P-201ENST00000362347 106 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 RNU6-1188P-201ENST00000363795 107 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 RNU6-99P-201ENST00000364721 107 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 RNU6-318P-201ENST00000384283 103 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 RNU6-1031P-201ENST00000384773 107 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 Y_RNA.577-201ENST00000384794 101 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 MIR150-201ENST00000385048 84 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 SNORA67.6-201ENST00000391093 99 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 MRPL42P3-201ENST00000401492 326 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 RNU6-370P-201ENST00000411008 104 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AC114482.1-201ENST00000418010 247 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AC010154.1-201ENST00000425857 269 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AC245047.3-201ENST00000429428 127 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.34□□□□□ -2.19
DDX28Q9NUL7 MIR2053-201ENST00000459295 91 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AC027419.1-201ENST00000522976 328 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AC023157.2-201ENST00000540596 141 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.34□□□□□ -2.19
DDX28Q9NUL7 MIR1244-1-201ENST00000612829 85 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 AL121890.5-201ENST00000620848 304 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 MIR1244-3-201ENST00000635744 85 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 MIR1244-2-201ENST00000636449 85 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 MIR1244-4-202ENST00000636813 85 ntBASIC1.34□□□□□ -2.19
DDX28Q9NUL7 SNORA20B-201ENST00000384220 132 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 RNU6-310P-201ENST00000384655 107 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 MIR517C-201ENST00000385103 95 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 RNU6-440P-201ENST00000390882 105 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 RNU11-5P-201ENST00000391216 129 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 SNORA75.6-201ENST00000391318 127 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 MRPL35P1-201ENST00000404272 572 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 AL355796.1-201ENST00000406706 323 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.646-201ENST00000410980 101 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 MTCO3P19-201ENST00000415864 321 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 RNU1-92P-201ENST00000517017 135 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.33□□□□□ -2.2
DDX28Q9NUL7 AC080078.3-201ENST00000605407 463 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 AL355073.2-201ENST00000612106 557 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 AC021506.2-201ENST00000612354 169 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 AC025253.1-201ENST00000613623 543 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 MIR8070-201ENST00000616510 88 ntBASIC1.33□□□□□ -2.2
DDX28Q9NUL7 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.32□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.474-201ENST00000384341 102 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 MIR625-201ENST00000385047 85 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 MIR513A1-201ENST00000385138 129 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.32□□□□□ -2.2
DDX28Q9NUL7 MIR1323-201ENST00000408090 73 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 RNU6-1156P-201ENST00000410365 100 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 RNA5SP475-201ENST00000410568 110 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.32□□□□□ -2.2
DDX28Q9NUL7 RNU7-95P-201ENST00000459222 64 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 RNU6-625P-201ENST00000459412 107 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 MIR3937-201ENST00000580135 106 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 AL162424.1-201ENST00000602325 221 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 AL390123.1-201ENST00000603216 237 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 AC113139.1-201ENST00000605049 239 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 AC018630.2-201ENST00000534866 2403 ntBASIC1.32□□□□□ -2.2
DDX28Q9NUL7 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
DDX28Q9NUL7 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.31□□□□□ -2.2
DDX28Q9NUL7 RNU6-1301P-201ENST00000362724 104 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.118-201ENST00000363300 101 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.327-201ENST00000365201 102 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 RNU6-1065P-201ENST00000384513 106 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 SNORA69.1-201ENST00000390904 137 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 MIR1304-201ENST00000408243 91 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 RPS27P16-201ENST00000425758 201 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 PGBD4P5-201ENST00000445958 426 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.31□□□□□ -2.2
DDX28Q9NUL7 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.31□□□□□ -2.2
DDX28Q9NUL7 AC097462.1-201ENST00000514125 324 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 SNORA40.9-201ENST00000515895 93 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 RNA5SP61-201ENST00000516453 100 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 RNU7-172P-201ENST00000517125 64 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.31□□□□□ -2.2
DDX28Q9NUL7 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 MIR3674-201ENST00000636576 68 ntBASIC1.31□□□□□ -2.2
DDX28Q9NUL7 RNU1-22P-201ENST00000363334 158 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 RNU6-1310P-201ENST00000384153 107 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 AL034345.1-201ENST00000407768 123 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 SNORD12B-201ENST00000410433 91 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 SNX2P2-201ENST00000424553 323 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms